PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.4KG136400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 685aa MW: 80287.1 Da PI: 8.3944

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.4KG136400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.9	2.4e-11	119	193	8	90
FAR1 8 kevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 G+ +rk +++ + +++++ C+++gk++ +++ ++ rr++ +tgCk k+ vk+ +gkw+ tk+++e nH+++ Pavir.4KG136400.1.p 119 LLNGYAIRKGTNYLK------KTYQLECNRSGKPKVMENA-QRIRRRNYILKTGCKMKVIVKLI-NGKWVFTKVNSENNHNVV 193 556777777777666......56889********9999.99*****************.*************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.3E-9	115	193	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-35	316	409	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MRLLKVKMQE VRICGKPDIQ DTAEMLRIDS YQGDSYQGNL DEAVEDLVMI TGSEGHEMTN 60 NAAQVVHEDN VSDDESIIAK NQEYIFPNPE EVEKSTEPSV GMVFESLTEA QRYLNVHGLL 120 NGYAIRKGTN YLKKTYQLEC NRSGKPKVME NAQRIRRRNY ILKTGCKMKV IVKLINGKWV 180 FTKVNSENNH NVVSSPSLTK FFLNHKRTTE DEKAFSKILQ GARIKPMKIM SIFRELKGSF 240 KNVFFNTKNL DNLKQKERIK TRNSDIETTI NYLKKVQNES PGFYYTMRMD EENIVRSIFW 300 TDARGRMDYD LYGDFISFDT TFSTNRYNMP FALIVGINGH GKNVIFGCAL IEDQTAETFE 360 WVFRTFVETM SGKKPKIIMT DQDAAMKKAI ANYMPDVIHR LCIWHIMKNL HEKCGCFMSQ 420 KHREGMEKRL NELVYDSLPI AEFESGWQTM LQDYDAEKNE HLQLMYRFRK LWVPVYFKDT 480 MCPFIHSTSR SESTNSYFKD YVISKDTIEN FMRQFEIIQE AKALDIFVKF QEELFNSSAF 540 SVNEIIKDHK YTIVKNCFYK NAEFWKDKFI IEVDRIKQEF KCECCKLQRD GLLGINKLPD 600 SCINRRWTKT YREEELEKQK KKCIEDPGCT KAQKASIYAM VNNKVTAIWS DICNNAAQSK 660 EFLEELQRFH EKMLKEKEDN NKMK*

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MRLLKVKMQE VRICGKPDIQ DTAEMLRIDS YQGDSYQGNL DEAVEDLVMI TGSEGHEMTN  60
NAAQVVHEDN VSDDESIIAK NQEYIFPNPE EVEKSTEPSV GMVFESLTEA QRYLNVHGLL  120
NGYAIRKGTN YLKKTYQLEC NRSGKPKVME NAQRIRRRNY ILKTGCKMKV IVKLINGKWV  180
FTKVNSENNH NVVSSPSLTK FFLNHKRTTE DEKAFSKILQ GARIKPMKIM SIFRELKGSF  240
KNVFFNTKNL DNLKQKERIK TRNSDIETTI NYLKKVQNES PGFYYTMRMD EENIVRSIFW  300
TDARGRMDYD LYGDFISFDT TFSTNRYNMP FALIVGINGH GKNVIFGCAL IEDQTAETFE  360
WVFRTFVETM SGKKPKIIMT DQDAAMKKAI ANYMPDVIHR LCIWHIMKNL HEKCGCFMSQ  420
KHREGMEKRL NELVYDSLPI AEFESGWQTM LQDYDAEKNE HLQLMYRFRK LWVPVYFKDT  480
MCPFIHSTSR SESTNSYFKD YVISKDTIEN FMRQFEIIQE AKALDIFVKF QEELFNSSAF  540
SVNEIIKDHK YTIVKNCFYK NAEFWKDKFI IEVDRIKQEF KCECCKLQRD GLLGINKLPD  600
SCINRRWTKT YREEELEKQK KKCIEDPGCT KAQKASIYAM VNNKVTAIWS DICNNAAQSK  660
EFLEELQRFH EKMLKEKEDN NKMK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.4KG136400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0A9T3X6	0.0	A0A0A9T3X6_ARUDO; Uncharacterized protein
STRING	Pavir.Ha01487.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-70	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.4KG136400.1.p