PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG134100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CO-like
Protein Properties Length: 413aa    MW: 44643.7 Da    PI: 4.8084
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG134100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.9e-07546540
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                          C+ ++e++   +C+++   lC +C  + H+       Ht++
  Pavir.4KG134100.1.p  5 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRS 46
                         6*****************************657888888875 PP
2zf-B_box25.62.5e-084790441
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           C+++ +++++  C   +  lC++C  ++H        H++++
  Pavir.4KG134100.1.p 47 LLCDRCASQPATVRCLVENASLCQNCDWNGHATgssaagHKRQT 90
                         57*****************************6678888898876 PP
3CCT64.23.9e-22355398144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  Pavir.4KG134100.1.p 355 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 398
                          899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.755148IPR000315B-box-type zinc finger
SMARTSM003364.5E-13148IPR000315B-box-type zinc finger
CDDcd000211.39E-7548No hitNo description
PROSITE profilePS501199.0444491IPR000315B-box-type zinc finger
PfamPF006431.4E-54790IPR000315B-box-type zinc finger
CDDcd000215.33E-64891No hitNo description
SMARTSM003360.924991IPR000315B-box-type zinc finger
PROSITE profilePS5101715.467355397IPR010402CCT domain
PfamPF062037.0E-17355397IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MMGALCDFCG EQRSMVYCRS DAASLCLSCD RNVHSANALS RRHTRSLLCD RCASQPATVR  60
CLVENASLCQ NCDWNGHATG SSAAGHKRQT INCYSGCPSS AELSRIWSFV SDIPNVAPEP  120
NCEQGISMMS ISDSGVSNQD NAAGDNNLFD IVSATLMSDL DTCDKPFVGS SLGAGVNLLP  180
LAPDQTAGTE DSTTIKDCLV QVLYTPDKDM FSKDSIYEDF CVDDVDLAFE NYEELFGTSH  240
IQMEQLFDDA GIDSYFEVKE VPAGDSTEQP KLMQPANSNA VSADSGMSNP GVKGDSSVCI  300
PPRQARSSLS LSFSGFTGES SAGDHQDCVV SSLLLMGEPP WQPPGPEGSI AGGSRDSALT  360
RYKEKKKRRK FDKKIRYASR KARADVRKRV KGRFVKAGEA YDYDPLSQTR SY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364368KKKRR
2364369KKKRRK
3365369KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.163020.0callus| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG134100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658621.10.0uncharacterized protein LOC100282916 isoform X1
RefseqXP_008658622.10.0uncharacterized protein LOC100282916 isoform X1
SwissprotQ9SSE51e-122COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2T7DZM30.0A0A2T7DZM3_9POAL; Uncharacterized protein
STRINGGRMZM2G013398_P040.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.19e-85B-box type zinc finger protein with CCT domain