PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG117900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family BES1
Protein Properties Length: 358aa    MW: 37697.6 Da    PI: 8.291
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG117900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822209.77.5e-65141622148
               DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasas 89 
                          g++r ptw+ErEnn+rRERrRRaiaaki+aGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+  e+++ +g+sas s
  Pavir.4KG117900.1.p  14 GGTRVPTWRERENNRRRERRRRAIAAKIFAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPTaaERHDPIGRSASPS 103
                          789************************************************************************9999*********** PP

               DUF822  90 pesslqsslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvss 148
                          p+ss+q        +sp++sy++sp+sssfps+ s+++i+l  +        +sl+p+l++ls++ss
  Pavir.4KG117900.1.p 104 PCSSYQ--------PSPRASYNPSPASSSFPSSGSSSHITLGGNnfiggvegSSLIPWLKNLSSSSS 162
                          ******........9************************9998899*****9*********998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.8E-7014158IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTSGAGAGGG GGLGGTRVPT WRERENNRRR ERRRRAIAAK IFAGLRAYGN YNLPKHCDNN  60
EVLKALCNEA GWTVEPDGTT YRKGCKPTAA ERHDPIGRSA SPSPCSSYQP SPRASYNPSP  120
ASSSFPSSGS SSHITLGGNN FIGGVEGSSL IPWLKNLSSS SSIASSSKFP QLHHLYFNSG  180
SISAPVTPPS SSPTRTPRIK TDWENPSVQP PWAVSNYASL PNSQPPSPGR HQVAPDPAWL  240
AGFQISSAGP SSPTYSLVAP NPFGIFKENI ASTSRMCTPG QSGTCSPVMG GVPIHHDVNM  300
VDGAPDDFAF GSSSNGNNES PGLVKAWEGE RIHEECASDE HELELTLGSS KTRADPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A3e-241791372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B3e-241791372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C3e-241791372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D3e-241791372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.74640.0callus| leaf
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG117900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813584.10.0protein BZR1 homolog 3
SwissprotQ5Z9E50.0BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLA0A2S3HIR00.0A0A2S3HIR0_9POAL; Uncharacterized protein
STRINGPavir.Da00929.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.12e-60BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]