PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG113400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 708aa    MW: 79610.2 Da    PI: 8.9875
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG113400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.92.1e-10139211190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn Y+ e GF vr  + kk+ +++  tk + vCs+e +                 +rt+Cka++++++++d+ w++++++  H+H l+
  Pavir.4KG113400.1.p 139 DFYNLYSWEKGFGVRFGRGKKN-DSKYQTKLDIVCSCERS----------------ASRTDCKAMIRLHRRSDHSWYISRVNDTHSHRLT 211
                          69***************99998.66668999****98743................4689***************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509666.96164194IPR007527Zinc finger, SWIM-type
PfamPF031012.0E-6176211IPR004330FAR1 DNA binding domain
PfamPF105511.1E-12333409IPR018289MULE transposase domain
PfamPF044344.6E-5513547IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.163513548IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-4523550IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MDPIQSSLAH ATLRDQQCGR HIASDFISAA GEPTIPWQQG DAQVAVVAVI AQKDPLQLQQ  60
GHRQALDCST RTGTPNNSTC SPTRGPKRRA RREGPDYRIA PAEETAMIKA MRRARTSPGE  120
AIFFPHEGTI FNSRDEARDF YNLYSWEKGF GVRFGRGKKN DSKYQTKLDI VCSCERSASR  180
TDCKAMIRLH RRSDHSWYIS RVNDTHSHRL TEAYGENKHW KSHSYIDPST KDLIKKLREN  240
NISLGRICNI LGATDGGSRS AMRKESVRSI CAKMAQENMR DDIGKTLKLL ETMKGTDPGL  300
EVRFQLDADG RLKSMLWCTG KNRMDYSSFG DAITFDTTYH TNLYSLPFGL FMGINNHFQY  360
IVLGGLLLTS ETTADFEWAF ANFISIMGGK APITMLTGMT STQRSESANH MLKRFIQRAA  420
PMHLFVAKFN EFQSDRNDQE SKESFVTNQV PRKLRVSVPI ENHAHTIYTR ATYEKFYDEL  480
FESGRFAITS KISECEYIVT DTKQDTEEAT TQFTVTLQGT SKVTCQCGLF EHMGMLCRHA  540
LKVLVHLDRQ EIPAGNIMRR WTKEGLEHSL SVDSKATMAA HNDNMRKKLL LTIVFEIANK  600
EATLSETTFH QAMEAMKDST DPPLEPALAD ITNTSTAAIA EVRPTACPPR TMLGGRPPNT  660
GLQSWLASRK RSSNKTANSA SALVADWPDE ENTPTKKRRS ISDIMYK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388RGPKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG113400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.Ab02590.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-27FAR1-related sequence 5