PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG107900.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 509aa    MW: 55704.6 Da    PI: 7.4156
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG107900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.33.6e-1473112141
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                          k+kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C N+ e
  Pavir.4KG107900.2.p  73 KKKKHCNCKNSQCLKLYCECFAAGDYCDG-CNCKQCGNTVE 112
                          589**************************.********987 PP
2TCR50.34.8e-16157196140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  Pavir.4KG107900.2.p 157 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 196
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.8E-1473113IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.98574197IPR005172CRC domain
PfamPF036385.6E-1175110IPR005172CRC domain
SMARTSM011146.0E-19157198IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.5E-12160195IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEQEKQQRVE PPASAPASVP QAASEPRASP QPQEQPKPAV PVQPSIPVTR PWPMAIIPSV  60
KPVVEMKSGT PAKKKKHCNC KNSQCLKLYC ECFAAGDYCD GCNCKQCGNT VENEKGRQEA  120
INNTKLRNPN AFQPKIENGP IIPSVRKDAG APPSLPKHNK GCHCKKSGCL KKYCECFQAN  180
ILCSKNCKCM DCKNFEGSEE LRVIIQGDNS CDRNNIQQAA NVALNGAIGS SGYRFSPVRR  240
KRPPEDPHYQ RLSVEGSMTQ MQFSEANHFD ASQIASSSGL EGSTGNFQCK SKLVYRSPLA  300
NTIHLTDVNA LANRLVIVCK KAAEGFTAIA DNKEMEIDRE ICTNTDQNFD ENKKEVQKAA  360
ASQLTEIDQQ IPAECGSYCS NTQVDSRPAS PGTRALLCDE QDLTFGTAYR SSIPVALHDQ  420
DISELQTAQE NAVLREFRNY LRLIIARGQV NEGKSSSGTG MELDAMRNHE SSTSLPPVKA  480
EEKSNDLDDP KNPNTSQSFA STVYQHTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-27682064132Protein lin-54 homolog
5fd3_B1e-27682064132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG107900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0617080.0BT061708.1 Zea mays full-length cDNA clone ZM_BFb0176J22 mRNA, complete cds.
GenBankKJ7280220.0KJ728022.1 Zea mays clone pUT6158 CPP transcription factor (CPP12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810513.10.0protein tesmin/TSO1-like CXC 5 isoform X2
TrEMBLA0A2T7DYD40.0A0A2T7DYD4_9POAL; Uncharacterized protein
STRINGPavir.Da01744.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-91Tesmin/TSO1-like CXC domain-containing protein