PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.4KG106600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 144aa MW: 16946.4 Da PI: 10.5012 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.4 | 8.6e-22 | 23 | 110 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kf+ eY+ ++GF+vrk++++ s+ +g++++ +fvCs+e +r++ +++ + ++ raetrt+Cka++ + + +++evt+++leHnH l Pavir.4KG106600.1.p 23 KFWVEYGGRTGFDVRKRYTNASSYDGKVISCRFVCSNEDHRRKGQTN-NVRKCFRAETRTDCKARISIVVRGVENYEVTNVVLEHNHFL 110 69*****************************************9999.89999**********************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-17 | 23 | 110 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence Send to blast |
MAELEKGTPQ VGLRFRNPDE AWKFWVEYGG RTGFDVRKRY TNASSYDGKV ISCRFVCSNE 60 DHRRKGQTNN VRKCFRAETR TDCKARISIV VRGVENYEVT NVVLEHNHFL HLPETRHLMA 120 SQRNERKMMV HNIQRKWRMM VAT* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.4KG106600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462668.1 | 4e-66 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_021310602.1 | 4e-66 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A287W7A6 | 2e-56 | A0A287W7A6_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287W7H4 | 3e-56 | A0A287W7H4_HORVV; Uncharacterized protein | ||||
STRING | Sb02g029930.1 | 2e-65 | (Sorghum bicolor) | ||||
STRING | Sb02g042670.1 | 4e-67 | (Sorghum bicolor) | ||||
STRING | Sb04g038323.1 | 5e-66 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G12850.1 | 5e-13 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.4KG106600.1.p |