PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG101800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 296aa    MW: 32349.3 Da    PI: 4.7579
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG101800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.7e-1969122356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L  rqV vWFqNrRa++k
  Pavir.4KG101800.1.p  69 KKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWK 122
                          4557899**********************************************9 PP
2HD-ZIP_I/II125.72e-4068160193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl+++qv++LE+sFe ++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal++e ++L++++++L++e
  Pavir.4KG101800.1.p  68 EKKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWKTKQIERDFAALRARHDALRAECDALRRDKDALAAE 157
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          ++e
  Pavir.4KG101800.1.p 158 IRE 160
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-1951125IPR009057Homeodomain-like
SuperFamilySSF466892.38E-1861126IPR009057Homeodomain-like
PROSITE profilePS5007116.47164124IPR001356Homeobox domain
SMARTSM003896.0E-1967128IPR001356Homeobox domain
CDDcd000862.52E-1669125No hitNo description
PfamPF000463.5E-1669122IPR001356Homeobox domain
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PfamPF021835.5E-15124165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKRPTSRGSS MVSQATTDQQ EDSCRYMERH GVDGDGTAAA DRDDMEAGAY DEEDDDEELA  60
GSRGGLGEKK RRLAADQVRA LERSFEVDNK LDPERKARIA RDLSLHPRQV AVWFQNRRAR  120
WKTKQIERDF AALRARHDAL RAECDALRRD KDALAAEIRE LREKVERQMD VKLESAEEML  180
PVAAGTAAAA AAVYKDGSTD SDSSAVFNEE ASPYSGTAFD HQHQHQLHPS FTGFTSFLAS  240
SSSLSSSLPT SLYHGVSHLD QEADGFLSAA AADGFFAEAE QGAAGLGSWY GGEGW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116124RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.178190.0callus| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG101800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0420270.0BT042027.1 Zea mays full-length cDNA clone ZM_BFb0113G23 mRNA, complete cds.
GenBankKJ7275560.0KJ727556.1 Zea mays clone pUT5416 HB transcription factor (HB127) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792352.11e-171homeobox-leucine zipper protein HOX8-like isoform X1
SwissprotQ338Z71e-93HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBLA0A3L6SDJ81e-173A0A3L6SDJ8_PANMI; Homeobox-leucine zipper protein HOX8-like isoform X1
STRINGPavir.J35191.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.18e-28homeobox protein 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]