PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG096000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24268 Da PI: 4.4944 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 53 | 102 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdps+ r++lg++ t+eeAa+a++aa+++++g Pavir.4KG096000.1.p 53 QFRGIRQRS-WGKWAAEIRDPSK---GVRVWLGTYNTPEEAARAYDAAALRIRG 102 69****999.**********965...4************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-23 | 53 | 112 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.4E-37 | 53 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-32 | 53 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.26E-23 | 53 | 111 | No hit | No description |
PROSITE profile | PS51032 | 23.933 | 53 | 110 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.8E-14 | 54 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 54 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-10 | 76 | 92 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MCGGAVVRDP VSPSRRQVTA KLLAAPGSVI AGDGLNTIAT GVDGSDGRKR KNQFRGIRQR 60 SWGKWAAEIR DPSKGVRVWL GTYNTPEEAA RAYDAAALRI RGIKAKLNFP DEVPVAKMDT 120 EEELITNNMT NSNADYYPVV DHTIPEPFIQ TQNIQEPLVN LSSDQGNANF GFSEFEPMNF 180 LMDSSDYSSN TFLGSDESQD GYISVQLWNF DDMPMPGGFY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 53 | 113 | 2 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG096000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812394.1 | 1e-118 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 6e-40 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A3L6PGE6 | 1e-118 | A0A3L6PGE6_PANMI; Ethylene-responsive transcription factor 1-like isoform X3 | ||||
STRING | Pavir.Da01893.1.p | 1e-148 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 3e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG096000.1.p |