PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG095900.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 450aa MW: 48562.2 Da PI: 4.7683 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.3 | 4.9e-12 | 299 | 344 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq Pavir.4KG095900.4.p 299 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 344 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.46E-13 | 292 | 348 | No hit | No description |
SuperFamily | SSF47459 | 4.19E-17 | 292 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.212 | 294 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-17 | 296 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.8E-9 | 299 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-14 | 300 | 349 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MDYSSGSYFS PWPVNSASER YSLTDGSVES FGDGSMPPSS YFMTASSDHS LKFNGHEQDS 60 TMLTNERLTY ADTGPADMLP GEILSRDKIP ENLLELQRLQ NNGNLQSNLV NPRVLQRTST 120 PGGFHQQLNT SCLSEMPHAL SSSIDSNSSE VSAFLADVNA VSSASSLCPT FQNHPSFMEP 180 VNIEAFSFQG AQCDAILNKT SHPNGNISVF DNATLASLHE QNPMCNVPIP AFTARNQMAV 240 TTTQGAQILQ QMPSLVNENK SDCPVSRPSD VQNQANSAGN GVGMKPRVRA RRGQATDPHS 300 IAERLRREKI SDRMKNLQDL VPNSNKADKA SMLDEIIDYV KFLQLQVKVL SMSRLGSPGA 360 VLPLLTESQT EGCHGQPLSA STNAQGLLDA QDSEDGLAFE EEVVKLMETS ITSAMQYLQN 420 KGLCLMPVAL ASAISTQKGV SDTAIPPER* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7768 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG095900.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812392.1 | 0.0 | transcription factor bHLH110-like | ||||
TrEMBL | A0A3L6PDT8 | 0.0 | A0A3L6PDT8_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Db01966.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 2e-58 | LJRHL1-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG095900.4.p |