PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG095900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 481aa MW: 52015.1 Da PI: 4.8728 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.4e-12 | 330 | 375 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +Ka++L + ++Y+k Lq Pavir.4KG095900.2.p 330 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 375 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-17 | 323 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.03E-13 | 323 | 379 | No hit | No description |
PROSITE profile | PS50888 | 17.212 | 325 | 374 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.2E-17 | 327 | 384 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-9 | 330 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-14 | 331 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MDYSSGSYFS PWPVNSASER YSLTDGSVES FGDGSMPPSS YFMTASSDHS LKFNGHEQDS 60 TMLTNERLTY ADTGPADMLP GEILSRDKIP ENLLELQRLQ NNGNLQSNLV NPRVLQRTST 120 PGGFHQQLNT SCLSEMPHAL SSSIDSNSSE VSAFLADVNA VSSASSLCPT FQNHPSFMEP 180 VNIEAFSFQG AQCDAILNKT SHPNGNISVF DNATLASLHD SKEFISSRLP LFSSVQETNL 240 AAIGFKTQKQ EQNPMCNVPI PAFTARNQMA VTTTQGAQIL QQMPSLVNEN KSDCPVSRPS 300 DVQNQANSAG NGVGMKPRVR ARRGQATDPH SIAERLRREK ISDRMKNLQD LVPNSNKADK 360 ASMLDEIIDY VKFLQLQVKV LSMSRLGSPG AVLPLLTESQ TEGCHGQPLS ASTNAQGLLD 420 AQDSEDGLAF EEEVVKLMET SITSAMQYLQ NKGLCLMPVA LASAISTQKG VSDTAIPPER 480 * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.7768 | 0.0 | callus| leaf| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG095900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812392.1 | 0.0 | transcription factor bHLH110-like | ||||
TrEMBL | A0A2S3HL11 | 0.0 | A0A2S3HL11_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7E1V7 | 0.0 | A0A2T7E1V7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Db01966.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 3e-58 | LJRHL1-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG095900.2.p |