PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG095900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 481aa    MW: 52015.1 Da    PI: 4.8728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG095900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-12330375555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  Pavir.4KG095900.1.p 330 HSIAERLRREKISDRMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 375
                          99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.71E-17323385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.03E-13323379No hitNo description
PROSITE profilePS5088817.212325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-17327384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9330375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-14331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MDYSSGSYFS PWPVNSASER YSLTDGSVES FGDGSMPPSS YFMTASSDHS LKFNGHEQDS  60
TMLTNERLTY ADTGPADMLP GEILSRDKIP ENLLELQRLQ NNGNLQSNLV NPRVLQRTST  120
PGGFHQQLNT SCLSEMPHAL SSSIDSNSSE VSAFLADVNA VSSASSLCPT FQNHPSFMEP  180
VNIEAFSFQG AQCDAILNKT SHPNGNISVF DNATLASLHD SKEFISSRLP LFSSVQETNL  240
AAIGFKTQKQ EQNPMCNVPI PAFTARNQMA VTTTQGAQIL QQMPSLVNEN KSDCPVSRPS  300
DVQNQANSAG NGVGMKPRVR ARRGQATDPH SIAERLRREK ISDRMKNLQD LVPNSNKADK  360
ASMLDEIIDY VKFLQLQVKV LSMSRLGSPG AVLPLLTESQ TEGCHGQPLS ASTNAQGLLD  420
AQDSEDGLAF EEEVVKLMET SITSAMQYLQ NKGLCLMPVA LASAISTQKG VSDTAIPPER  480
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.77680.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG095900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812392.10.0transcription factor bHLH110-like
TrEMBLA0A2S3HL110.0A0A2S3HL11_9POAL; Uncharacterized protein
TrEMBLA0A2T7E1V70.0A0A2T7E1V7_9POAL; Uncharacterized protein
STRINGPavir.Db01966.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-58LJRHL1-like 3