PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG086600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 134aa MW: 15625.8 Da PI: 10.4158 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.6 | 7.8e-22 | 23 | 111 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 +f+ +Y+ ++GF+vrk++s+ s +g++t+ +fvCs+eg r++ +++ + ++ raetrt+Cka++ + +++ ++ev++++leHnH l Pavir.4KG086600.1.p 23 QFWLAYGGRTGFDVRKRYSNGSPFDGKVTSCRFVCSNEGLRRKGQTN-RATKCFRAETRTDCKARISLILDRvARNYEVNDVVLEHNHLL 111 69*****************************************9999.99999***************99999***************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-17 | 23 | 111 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MAELNKETPQ VGLRFKSADE AWQFWLAYGG RTGFDVRKRY SNGSPFDGKV TSCRFVCSNE 60 GLRRKGQTNR ATKCFRAETR TDCKARISLI LDRVARNYEV NDVVLEHNHL LHLPETRHLW 120 HRREKFQNCK LLK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG086600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002462668.1 | 5e-76 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_021310602.1 | 5e-76 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A453IBT6 | 1e-54 | A0A453IBT6_AEGTS; Uncharacterized protein | ||||
STRING | Sb02g029930.1 | 2e-75 | (Sorghum bicolor) | ||||
STRING | Sb02g042670.1 | 5e-77 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 4e-13 | FAR1-related sequence 12 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG086600.1.p |