PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG086300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 314aa MW: 35533.7 Da PI: 6.8716 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.1 | 3.7e-12 | 140 | 183 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+ E+ l++++ + +G g+Wk I++++ ++Rt+ q+ s+ qky Pavir.4KG086300.1.p 140 WTKAEHRLFLRGLQVYGRGSWKNISKYFVTTRTPLQVSSHAQKY 183 *******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.481 | 132 | 188 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.42E-16 | 136 | 189 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.8E-10 | 136 | 186 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.2E-12 | 139 | 186 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 139 | 185 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.26E-9 | 140 | 184 | No hit | No description |
Pfam | PF00249 | 5.1E-10 | 140 | 183 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MDSTMSNGEW STSEINMARS LIARFNTNNI VSGGMNKKHN DIVNEIQTMF PMKEKHQVIH 60 LYVDLMVEMM QSGTGDGSYH STTTSRYLVN NFEISEDSTM DNMGMLLGYP TMEIGVMRMA 120 QEVPRRQPTP RMERAHTRFW TKAEHRLFLR GLQVYGRGSW KNISKYFVTT RTPLQVSSHA 180 QKYFRRLENP TRRQRYSIND IGLYDAEPWA QNNTSNREGF NFGGGAYNPS RYGASGQHAT 240 MNNQAQVHSP ILYHANQASA SSQAAAWAGD QQIGATNSTV APVMEEDGGS QAAWTVDQLE 300 DFFNDQMMNM DMF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG086300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966689.1 | 1e-165 | uncharacterized protein LOC101759880 | ||||
TrEMBL | A0A3L6PF69 | 1e-169 | A0A3L6PF69_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Da02101.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-21 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG086300.1.p |