PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG085200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 422aa    MW: 45113.3 Da    PI: 6.6377
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG085200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-10373419447
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          W   E+e l ++v+++G+g+Wk I +  +    gRt+ ++k++w++ 
  Pavir.4KG085200.1.p 373 WCLLEEETLRKGVELYGSGNWKDILSNNPdvfIGRTPVDLKDKWRNM 419
                          55669****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-13364421IPR009057Homeodomain-like
PROSITE profilePS5129415.937365421IPR017930Myb domain
SuperFamilySSF466898.07E-14367420IPR009057Homeodomain-like
SMARTSM007170.0079369421IPR001005SANT/Myb domain
CDDcd116608.84E-19371421No hitNo description
PfamPF002498.0E-9372419IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPRLTPADAT LILDHALGDP SVPAAAVHAL LAALPFPSDP TPRLRRAVLL RRLAADPVSA  60
SALDTLHLLA SLPASPSPCP TPIAAAHIAV AGFLAASAPD FDAAATALFA RPDGRVRRAV  120
AEGGSPALAS DDAIATVDQF EAAVGNSFSQ VVLRGLWGDR AAAEERVREL LAAEWAVTGP  180
SLLEVAAERI VGDGSIQTWR DAKEANRAKF RVLAGEEKTR EILGKLEEST SRVNPISTPE  240
FSKVVDALKT SCAELHSVVE DPLPAAKAAA DEVVASRVDR AVNLNAETGQ PAACGTAGSS  300
VLHEKNNCPN KGRPPSLMDW NPMARTFQWE ESPDPEGSEP ALPRPHLPSP RRIPVSPLPP  360
AENKNKRRRA RKWCLLEEET LRKGVELYGS GNWKDILSNN PDVFIGRTPV DLKDKWRNMM  420
R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG085200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811007.10.0uncharacterized protein LOC112888859
TrEMBLA0A2T7E2540.0A0A2T7E254_9POAL; Uncharacterized protein
STRINGSi006005m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31543040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-12TRF-like 5