PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG083200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 24477.3 Da PI: 3.9524 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 22.6 | 3e-07 | 1 | 39 | 58 | 96 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelal 96 m++++ye++a+ P +G+v +i++lqq+++q++ +l Pavir.4KG083200.1.p 1 MHCIIYESHAWDMYPASGCVPIIHDLQQRIRQAELDLRC 39 789*****************************9988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 4.3E-5 | 1 | 38 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MHCIIYESHA WDMYPASGCV PIIHDLQQRI RQAELDLRCV YAGILAYRAA AAQGGVPVPD 60 SDGDPSASAS APPPPFQLQP ATGDDVAAET YGGGGWPFIT MYGGDQQQMV MNAAASDDDN 120 IALQMPPWMM QPPQYDMTTT SAAAVADMAG KLVAQQDHQF LVDATMVSQP EHQQQHTIQP 180 AELDDEMSYF VNDGVDGDSE MPPESSMYSS EKKAMRAPKM ESVNGF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG083200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813245.1 | 1e-115 | protein LATERAL ORGAN BOUNDARIES-like | ||||
TrEMBL | A0A2S3HLA1 | 1e-114 | A0A2S3HLA1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J35697.1.p | 1e-165 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15459 | 13 | 16 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG083200.1.p |