PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG079200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 285aa    MW: 30735.3 Da    PI: 4.7773
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG079200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.17.7e-3511107197
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          aCaaCk++rr+C++dC+la+ fp+++p+ f+n+h+lFG+sn+lk+l+++ +e+r++am++++ye++a+   P +G+v +i++lqq+++q+
  Pavir.4KG079200.1.p  11 ACAACKYQRRRCTPDCPLAEFFPHDRPRVFRNAHRLFGVSNILKTLDRAGPEKRREAMHCIIYESQAWDIYPASGCVPIIHDLQQRIRQA 100
                          7****************************************************************************************9 PP

               DUF260  91 kaelall 97 
                          + +l ++
  Pavir.4KG079200.1.p 101 ELDLRRV 107
                          9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.70510111IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-3411106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAAASGGAGA ACAACKYQRR RCTPDCPLAE FFPHDRPRVF RNAHRLFGVS NILKTLDRAG  60
PEKRREAMHC IIYESQAWDI YPASGCVPII HDLQQRIRQA ELDLRRVYAA IQAYRAAAAA  120
QGGGPVPDSD GDPLASASAP PPPFQLQPAT GDDDVAAEAY GGGGGWPSIT MYGGDQQQMV  180
MNAAAYDDVR QHYDMTTTSA AAVANMAGKL VPQQDHRFLV DATVVSQPEH QQQLTIQPAE  240
LDDEMSYFVN DGVDGDSEMP PESSMDSSEK KAMRAPKMES VNSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2221252123LOB family transfactor Ramosa2.1
5ly0_B3e-2221252123LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG079200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-38HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813245.11e-142protein LATERAL ORGAN BOUNDARIES-like
TrEMBLA0A2S3HLA11e-141A0A2S3HLA1_9POAL; Uncharacterized protein
STRINGPavir.Da02090.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154591316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-23LOB domain-containing protein 22