PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.4KG076900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 285aa MW: 30677.2 Da PI: 4.7773 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 111.1 | 7.7e-35 | 11 | 107 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++rr+C++dC+la+ fp+++p+ f+n+h+lFG+sn+lk+l+++ +e+r++am++++ye++a+ P +G+v +i++lqq+++q+ Pavir.4KG076900.1.p 11 ACAACKYQRRRCTPDCPLAEFFPHDRPRVFRNAHRLFGVSNILKTLDRAGPEKRREAMHCIIYESQAWDIYPASGCVPIIHDLQQRIRQA 100 7****************************************************************************************9 PP DUF260 91 kaelall 97 + +l ++ Pavir.4KG076900.1.p 101 ELDLRRV 107 9888765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.705 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.0E-34 | 11 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 285 aa Download sequence Send to blast |
MAAASGGAGA ACAACKYQRR RCTPDCPLAE FFPHDRPRVF RNAHRLFGVS NILKTLDRAG 60 PEKRREAMHC IIYESQAWDI YPASGCVPII HDLQQRIRQA ELDLRRVYAA IQAYRAAAAA 120 QGGGPVPDSD GDPLASASAP PPPFQLQPAT GDDDVAAEAY GGGGGWPSIT MYGGDQQQMV 180 MNAAAYDDVR QHYDMTTTSA AAVANMAGKL VPQQDHRFLV DATVVSQPEH QQQLTIQPAE 240 LDDEMSYFVN DGVDGDSEMP PESSMDSSEK KATRAPKMES ANSF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-22 | 2 | 125 | 2 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-22 | 2 | 125 | 2 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.4KG076900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 2e-38 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813245.1 | 1e-142 | protein LATERAL ORGAN BOUNDARIES-like | ||||
TrEMBL | A0A2S3HLA1 | 1e-141 | A0A2S3HLA1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da02090.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15459 | 13 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-23 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.4KG076900.1.p |