PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG075900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 438aa    MW: 43621.3 Da    PI: 6.7282
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG075900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12218263555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Pavir.4KG075900.1.p 218 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 263
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.46E-13211267No hitNo description
SuperFamilySSF474591.05E-16211272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-16215272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9218263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-13219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MQPSGREMAG GEGGPQQADD FFDQMLSTLP SAWADLGGGG TKSPWELPAG AEDAAVQAAF  60
GDDSSALLVS RLRQHQIGGD VKSPSSSSPV MLQLSDLHRH GGGLAGAGAE ESAGFSPLPL  120
FTDRSAPARE EMEGGFKSPN PAGGDHSLFN GFGMHGTAAV QPQFGQGGSV SPQSLGGPAV  180
SGGATTPAGG AASSAGGGAA PPRQVRQRAR RGQATDPHSI AERLRRERIA ERMKSLQELV  240
PNANKTDKAS MLDEIIDYVK FLQLQVKVLS MSRLGGAAGR APLVASMSSE GNSNGSGSNS  300
GGGAKGSAAT KANGSGGGEN GGGLRVAENQ VAKMMEEDMG TAMQYLQGKG LCLMPISLAS  360
AISSATSSAS LLSRPPPVLR HPAAASPAPP PGQLHDASNG GATANAATSP ASASSAGGGG  420
EDPRPTKDVV CGGGNKQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.127024e-31stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG075900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620761e-67BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279381e-67KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812267.10.0transcription factor bHLH82-like isoform X2
SwissprotQ9ZUG96e-69BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A3L6PF500.0A0A3L6PF50_PANMI; Transcription factor bHLH82
STRINGPavir.J04712.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-37LJRHL1-like 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]