PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG068400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 284aa MW: 32060.7 Da PI: 8.6896 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.2 | 7.8e-13 | 110 | 153 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT+ E+ l++++ + +G g+Wk I+r++ ++Rt+ q+ s+ qky Pavir.4KG068400.2.p 110 WTKAEHRLFLRGLQVYGRGNWKNISRYFVTTRTPLQVSSHAQKY 153 *******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.53 | 102 | 158 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.88E-16 | 106 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-11 | 106 | 156 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.3E-13 | 109 | 156 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.7E-10 | 109 | 155 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.1E-10 | 110 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.56E-10 | 110 | 154 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MDSTMSTGEW SASEINMVKS LIARFNSNIV LGDMSKKHSD IVNEIQTMFP MKEKHQVIHL 60 YVDLMVETMQ SGTGDGSYYS GTTGVRRVAQ EVLRRQSTPR MERAHNTRFW TKAEHRLFLR 120 GLQVYGRGNW KNISRYFVTT RTPLQVSSHA QKYFRRLENP TRRQRYSIND VGLYDTEPLA 180 QNNTSNWEGF SFAGGAYNPS LYGASGQHAT MNNQAQVQSH ILYHANQTST SNQVAAWAGD 240 QQIGATTSYV APVMEDGGSQ AAWTADQLGD FFHDQMMNNM DIF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG068400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966689.1 | 1e-139 | uncharacterized protein LOC101759880 | ||||
TrEMBL | A0A3L6PF69 | 1e-140 | A0A3L6PF69_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J01189.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 2e-21 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG068400.2.p |