PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG065100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 367aa    MW: 40146.7 Da    PI: 8.6851
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG065100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83.1e-16159205455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  E+rRR++iN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Pavir.4KG065100.1.p 159 VHNLSEKRRRSKINEKMKALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 205
                          6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-20152215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-20152215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.076155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-16158209No hitNo description
PfamPF000101.1E-13159205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-18161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MGATLKRRKR PRLQPQTHLL LSPLSSPPLP LLLAVTLRLW CGPGCMDEQG FGGFGGGRGA  60
AVRGQGREVM AALLQHQHHH HQRRRQLEVE EEAEEEEEAR RQMFAGVAAF PAAALGLGHE  120
ADYGEEAGGV GDSDAGGSEP EPARQRGGSG SKRSRAAEVH NLSEKRRRSK INEKMKALQS  180
LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LSMRNGVYLN PPYLSGALEP AQASQMFAAL  240
GGANITASSS GAVMPPVNQS SGAHQAFDPL NPPQNQPLSF VLPSVPDKTI PERQFHLESS  300
QPHLRTFRMP ESSEMMLRGE IMAKHQLTSA QEREMIGNPL GKNHQLQALI ILMVAHITKS  360
DYMIWY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410LKRRKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG065100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9696890.0EU969689.1 Zea mays clone 334086 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811540.11e-151uncharacterized protein LOC112889235 isoform X1
TrEMBLA0A2S3HLJ21e-149A0A2S3HLJ2_9POAL; Uncharacterized protein
TrEMBLA0A2T7E2L41e-149A0A2T7E2L4_9POAL; Uncharacterized protein
STRINGPavir.J38250.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-34bHLH family protein