PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG038200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 208aa MW: 23178.9 Da PI: 8.1377 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.8 | 1.4e-26 | 95 | 182 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++ GFs+r+s+s++ k++++i++rtf+Cs g r ++k++ e+ + +r+etr+ C+a +k++++ dg ++v+++e eHnH la Pavir.4KG038200.1.p 95 DFYNAYARDKGFSIRRSSSHNVKNTTTIKNRTFCCSHAGIRGPDKRE-ENLNYSRPETRCMCQALMKISLK-DGLYYVYEFEPEHNHILA 182 6*******************************************999.99999******************.***************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.4E-21 | 95 | 182 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MASRPDHHTS NNEANYMDLA PQLLPQGTSL IVPPTSPATA SPNFSGIKIP SVHTERMESG 60 TESSKTESAS QVENSLEDRI PKIGMKFCTE QEAYDFYNAY ARDKGFSIRR SSSHNVKNTT 120 TIKNRTFCCS HAGIRGPDKR EENLNYSRPE TRCMCQALMK ISLKDGLYYV YEFEPEHNHI 180 LATASQAHLL RSQRSITTAQ LASVRSC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG038200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020587576.1 | 2e-42 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A1W0W5Z8 | 2e-67 | A0A1W0W5Z8_SORBI; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.Da02291.1.p | 4e-86 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-15 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG038200.1.p |