PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG034700.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 578aa    MW: 60265.6 Da    PI: 7.0215
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG034700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.15e-30266325159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Pavir.4KG034700.2.p 266 MNDGCQWRKYGQKISKGNPCPRAYYRCTVAaGCPVRKQVQRCADDMSILITTYEGTHNHP 325
                          58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-31251325IPR003657WRKY domain
SuperFamilySSF1182904.84E-27259326IPR003657WRKY domain
PROSITE profilePS5081128.197261327IPR003657WRKY domain
SMARTSM007741.4E-36266326IPR003657WRKY domain
PfamPF031069.7E-27267325IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MIKGVKQHGS HEERLTDKTK DDDDLIPDGN VFKSLHESSS KGEACSPNPL ERSQIDEASN  60
QTSANLKAHN KVEEDKLAST RAEMGEVREE NKRLKTMLSR IVEDYRSLQL HFHDVLQQGQ  120
AKKLADPATA APLPTDVEEP EFVSLSLGTS TSTRKKEENS SVSEGKGRED SMNTKGGLSL  180
VLSDCKVGAT NNAKTIQPDV LTLSPEGSSE DAKDDAMEAA DQQWPPSKTL KNLRGVGAEA  240
EDDIGPLQQA KKTRVSVRAR CDAPTMNDGC QWRKYGQKIS KGNPCPRAYY RCTVAAGCPV  300
RKQVQRCADD MSILITTYEG THNHPLSASA TAMASTTSAA ASMLTSGSST SLRFPAASPA  360
AAAGLGFGFP DAAASKHFFL PNGGAASITS TPSYPTITLD LTSPEATSQA FSLSSRFPSS  420
SFGHGGARYP PTSFSFSTSG TSALSGGAWP AAGGAGYLSY GSPASSLFSG AKLSSFEAAL  480
SSINGRQQGG EAPVLHHQQQ KASASRSSTA GVLTDTIAKA ITSDPGFHTA LAAAITSYVG  540
AQGSRSSAAG GDGGGSQLQE LKWGQHLGLG PSPSSAAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-202663281778Probable WRKY transcription factor 4
2lex_A4e-202663281778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG034700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811456.10.0probable WRKY transcription factor 72
TrEMBLA0A2S3HLX20.0A0A2S3HLX2_9POAL; Uncharacterized protein
STRINGPavir.Da02223.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-60WRKY DNA-binding protein 72