PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG015200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 236aa    MW: 25083 Da    PI: 4.6525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG015200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.5e-1656108155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + ++GVr++ + grWv+e+r+p   g +  r +lg+f+ a+ Aa+a++aa++++ g
  Pavir.4KG015200.1.p  56 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDAADAAARAHDAAMLAIAG 108
                          579******************9...6445**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.0E-1256108IPR001471AP2/ERF domain
SMARTSM003801.9E-1657122IPR001471AP2/ERF domain
PROSITE profilePS5103220.17857116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-2657118IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1757118IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MCPMIKKEMS AAESSPPCSW ASTSTSSPEQ GRHQTVWTSP PKKPAGRTKF RETRHPVFRG  60
VRRRGNAGRW VCEVRVPGRR GCRLWLGTFD AADAAARAHD AAMLAIAGAG ACLNFADSAW  120
LLAVPASYAS LAEVRSAVAE AVEVFQRREA LSVSESEDDA ESSSAPSSPA SVELEGASTD  180
GEESSAFELD VFNDMSWDLY YASMAQAMLM EPPSAVPAFG EDGLAGAGDV PLWSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.16741e-146stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG015200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2034831e-127KT203483.1 Paspalum vaginatum clone Sp26 hypothetical protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803653.11e-124dehydration-responsive element-binding protein 1A-like
SwissprotA2Z3897e-94DRE1A_ORYSI; Dehydration-responsive element-binding protein 1A
TrEMBLA0A2T7EUV21e-125A0A2T7EUV2_9POAL; Uncharacterized protein
STRINGPavir.J03893.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-29C-repeat/DRE binding factor 1