PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG014500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 221aa    MW: 22956.6 Da    PI: 9.5342
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG014500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-202272256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                         ++ GVr+++ +grWvAeI+d      +r r +lg+f+taeeAa+a+++a+++l+ge
  Pavir.4KG014500.1.p 22 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARALRGE 72
                         589******.7*********....4456**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.4E-152272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-282280IPR001471AP2/ERF domain
PROSITE profilePS5103220.4682279IPR001471AP2/ERF domain
SMARTSM003809.9E-322285IPR001471AP2/ERF domain
CDDcd000182.13E-272380No hitNo description
SuperFamilySSF541713.79E-202380IPR016177DNA-binding domain
PRINTSPR003672.9E-82334IPR001471AP2/ERF domain
PRINTSPR003672.9E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAAQDGVRTA GTAAAAACRG RRFVGVRQRP SGRWVAEIKD SAQRVRLWLG TFDTAEEAAR  60
AYDEAARALR GEGARTNFAD RARRCGGAGA ARARLSKNLQ HVMARAAAAA GRSATACAGA  120
GEQFALAAQP HAPQQQAEAA AAKHAVQPSF VVPRRTEAPP SPSLGAGDPC WGDVSAELTT  180
MRAEERSFKV SSSMIVPPSF SASSESESES LGLEDFLATS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1522781471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG014500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801648.11e-82ethylene-responsive transcription factor ERF055-like
TrEMBLA0A3L6TDV62e-90A0A3L6TDV6_PANMI; Dehydration-responsive element-binding protein 2E-like
STRINGPavir.Ba01277.1.p2e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-10related to AP2 11