PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pavir.4KG006100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 352aa MW: 37639.5 Da PI: 6.6188 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 15 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd++k g+ +W++ ++ g++R++k+c++rw +yl Pavir.4KG006100.1.p 15 KGPWTPEEDKLLVDYIKDSKGHgSWRRLPKLAGLNRCGKSCRLRWTNYL 63 79***************988888************************97 PP | |||||||
2 | Myb_DNA-binding | 58.3 | 1.7e-18 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T eE++l+++++ lG++ W++Ia +++ gRt++++k++w+++l Pavir.4KG006100.1.p 69 RGRFTDEEEKLIIHLHSILGNK-WSSIATKLP-GRTDNEIKNYWNTHL 114 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.716 | 10 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-28 | 12 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-11 | 14 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 15 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-22 | 16 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.44E-10 | 17 | 63 | No hit | No description |
PROSITE profile | PS51294 | 28.063 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-17 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-27 | 71 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.55E-13 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 352 aa Download sequence Send to blast |
MGRSPCCDQD AGVKKGPWTP EEDKLLVDYI KDSKGHGSWR RLPKLAGLNR CGKSCRLRWT 60 NYLRPDIKRG RFTDEEEKLI IHLHSILGNK WSSIATKLPG RTDNEIKNYW NTHLRKKLLS 120 MGIDPVTHRP RTDLSLLAGI PNLLTAAAAA QQPPNTCWDI NALRLQADAA KYQLLQGLLR 180 ALSAPPAVDL MALLAATNNN GGGLVTQPQP AAGVDHQQYD GLLNLPALTS VPPATTLPAA 240 MSSSFSGLLS SSFGGAGSAL AGDGLSSTDL GHSGSSNMTA AMAPPPPLVV AAKECNNGGG 300 TSTPCDDTPA SSPFEGLENI NLDDEFNSDS WKDLLEQMSW LNNPNDQQQL M* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 15 | 118 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pavir.4KG006100.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727665 | 1e-154 | KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811879.1 | 0.0 | transcription factor MYB93-like | ||||
Swissprot | Q9S9Z2 | 3e-79 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A2S3HME5 | 0.0 | A0A2S3HME5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da02398.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5529 | 31 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-78 | myb domain protein 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pavir.4KG006100.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|