PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG004900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 385aa    MW: 42917 Da    PI: 9.6915
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG004900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.4e-08135198147
                          TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 
                          r+ WT+ ++e+lv+a  ++  +            W  I+ t +       +Rt+kq+k++w +y
  Pavir.4KG004900.1.p 135 RNEWTPADEEKLVNAWLMHSVDcvdgnsksgptFWGQISDTYNattdplRHRTAKQLKDHWSMY 198
                          789**********************************************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.411130199IPR017877Myb-like domain
SuperFamilySSF466899.79E-6132201IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-6134197IPR009057Homeodomain-like
SMARTSM007177.7E-5134201IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MLPRRSSTTR RSIAARRLLH PRNPERCFLQ LPGAFIGAPP PYPYPSYPYP PYPYPPAPAT  60
SRVAPPPYPY PAPMTDAPPP YPYPPYPYPP YPYPPPPTFT TSAPHGHAGG AASAGSENEG  120
GGTTAPCRPA IPKKRNEWTP ADEEKLVNAW LMHSVDCVDG NSKSGPTFWG QISDTYNATT  180
DPLRHRTAKQ LKDHWSMYNA RVSLFNAIYN QEVSKRQSGA DDDMVMDEAK ARYARRAGHE  240
FKLFHWWEAV RRQPKWSVKH GGGPNIDVSK RSRLGASGEY SSGSRETDEE VNRPPGRDRS  300
KAAARKGKGK VGSSSHTSTD SAEMGEKLED LCKITHEYAQ AKLWKQWNIL SSRSTDGMTD  360
AQKKVHDRAL KRLQQQLHLN DDDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.4KG004900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008670977.18e-86ribonuclease 3
TrEMBLA0A3L6FXG83e-84A0A3L6FXG8_MAIZE; Glutathione S-transferase T3
TrEMBLK7UAL23e-84K7UAL2_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGPavir.J22374.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3263337