PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.4KG002600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRF | ||||||||
Protein Properties | Length: 478aa MW: 51015.8 Da PI: 9.2807 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.8 | 2.2e-24 | 222 | 266 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+ Pavir.4KG002600.1.p 222 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 266 79****************************************986 PP | |||||||
2 | QLQ | 56.8 | 6.9e-20 | 147 | 181 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTaaQ+++L++Q+l+yKyL+a++ vPp+Ll++++ Pavir.4KG002600.1.p 147 VFTAAQWAELEQQALIYKYLMAGVAVPPDLLLPVR 181 5********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.9E-10 | 146 | 182 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.849 | 147 | 182 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.7E-14 | 148 | 181 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.346 | 222 | 266 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.1E-21 | 223 | 265 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
GSRGAGQAPA PGAVQEDRPP DSQRVRPAGG RDSIAIASKA NPSGFLPPIC RSPTDCPLPQ 60 AAASINGRHQ EPSNPLLTSL PTRLRRRPFP TPSACTFLVG LKEGGSEGWG WGEPVGARPS 120 MLSSASSAGA GMGVGGGYPP PQRGAAVFTA AQWAELEQQA LIYKYLMAGV AVPPDLLLPV 180 RPSPHSAAAA FSFASPGAAA SPFYHHHHPS LSYYAYYGKK LDPEPWRCRR TDGKKWRCSK 240 EAHPDSKYCE RHMHRGRNRS RKPVESKTAS PAHPSQQPQL STVTTTTRET APIDSLTVGG 300 KTHGLSLGGA GSSQLHVDAS NAHYRYGSKY PLGAKADAGE LSFFSGASGN SRCFTIDSPT 360 ENSWNSLPSN VPPFTLSKSR DSGLLPGTYS YSQLEPPQEL GQVTIASLSQ EQERHSFSSG 420 AGGLLGNVKQ ENQPLRPFFD EWPGTRDSWS EMDDARSNRT SFSTTQLSIS IPMPRCD* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.8974 | 0.0 | callus| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.4KG002600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF515853 | 1e-145 | EF515853.1 Zea mays putative growth-regulating factor 14 (GRF14) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811709.1 | 0.0 | growth-regulating factor 5-like isoform X1 | ||||
Swissprot | Q6AWY4 | 0.0 | GRF5_ORYSJ; Growth-regulating factor 5 | ||||
TrEMBL | A0A2T8JF37 | 0.0 | A0A2T8JF37_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da02366.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11046 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 3e-27 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.4KG002600.1.p |
Publications ? help Back to Top | |||
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