PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG326300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CPP | ||||||||
Protein Properties | Length: 168aa MW: 17029.3 Da PI: 7.8674 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 47.3 | 4.2e-15 | 91 | 128 | 3 | 40 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YC Cfa+g++C+e+C Ce C Nk Pavir.3NG326300.1.p 91 CKTCSCKKSKCLKLYCVCFASGSHCTESCGCEPCLNKP 128 89**********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 8.8E-10 | 89 | 130 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 13.052 | 90 | 167 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.2E-11 | 92 | 127 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MDVEEGAPKP PQHEPAGSEP DDARNTPPPP APLPPPPAAA PGPAPVPAPA SEAAAAAPAS 60 AAVSPPPPPP AEANGTSDRK KKRKAEDGEG CKTCSCKKSK CLKLYCVCFA SGSHCTESCG 120 CEPCLNKPMQ GAPRTAPVLP FKPVQTLEAG GWTRVSGTTY KVSYGSY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.12044 | 0.0 | leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG326300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054046 | 1e-74 | BT054046.1 Zea mays full-length cDNA clone ZM_BFc0149M24 mRNA, complete cds. | |||
GenBank | EU967670 | 1e-74 | EU967670.1 Zea mays clone 305228 tesmin/TSO1-like CXC domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809474.1 | 8e-58 | RNA-binding protein MEX3A-like | ||||
TrEMBL | A0A2S3HFB2 | 2e-56 | A0A2S3HFB2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00245.1.p | 1e-100 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9610 | 28 | 34 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG326300.1.p |