PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG317600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 166aa    MW: 19809.7 Da    PI: 10.6866
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG317600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding482.8e-15453148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48
                         r+rW +eEd  l  +v+q+G++ W++++++m+  + R +k+c +rw +yl
  Pavir.3NG317600.1.p  4 RQRWRPEEDAVLRAYVRQHGPREWHLVSQRMNvaLDRDAKSCLERWKNYL 53
                         89**********************************************97 PP
2Myb_DNA-binding37.36.5e-1259103147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +g+ T eE+ l +++ +++G++ Wk+Ia++++ gRt+k +  +w  +
  Pavir.3NG317600.1.p  59 KGSLTDEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103
                          6778******************.*********.*****999999766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.872153IPR017930Myb domain
SMARTSM007171.5E-11355IPR001005SANT/Myb domain
SuperFamilySSF466899.16E-22498IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-21660IPR009057Homeodomain-like
CDDcd001678.53E-8653No hitNo description
PfamPF139211.5E-13768No hitNo description
PROSITE profilePS5129422.98154108IPR017930Myb domain
SMARTSM007175.0E-1058106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-1661102IPR009057Homeodomain-like
CDDcd001675.93E-763104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009615Biological Processresponse to virus
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010338Biological Processleaf formation
GO:0042742Biological Processdefense response to bacterium
GO:0045088Biological Processregulation of innate immune response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:0000793Cellular Componentcondensed chromosome
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MKERQRWRPE EDAVLRAYVR QHGPREWHLV SQRMNVALDR DAKSCLERWK NYLRPGIKKG  60
SLTDEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE LRDSRRPPPE  120
PSPDQRGSSN THYPAFLEQY DISLLPQQKL YSKAHEYSLT FFFLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-157100797C-Myb DNA-Binding Domain
1msf_C7e-157100797C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.15930.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organ promordia. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG317600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1264891e-177AF126489.1 Zea mays rough sheath2 protein (rs2) gene, complete cds.
GenBankAF1434471e-177AF143447.1 Zea mays rough sheath 2 (rs2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105509.14e-73protein rough sheath 2
SwissprotQ9S7B24e-74RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A1E5V7B32e-72A0A1E5V7B3_9POAL; Protein rough sheath 2 (Fragment)
TrEMBLA0A3L6T2417e-72A0A3L6T241_PANMI; Protein rough sheath 2
STRINGPavir.Cb00486.1.p2e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51903654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.15e-66MYB family protein