PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG316700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 681aa MW: 74569.3 Da PI: 5.8827

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG316700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	315.3	1.3e-96	316	651	1	333
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lLl+cA+av+++d + a++lL++++ +as +gd+mqRla +f+e+L+arla+++s+++ p +++++ +++ l+a++l+ + + Pavir.3NG316700.1.p 316 LRTLLLHCAQAVATDDRRGATELLKQIERHASAHGDAMQRLARCFAEGLQARLAGTGSSTSTP-PLMPKQRTPVVDMLQAYQLYMAAICF 404 6789*************************************************77777743.444444456************* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k +l Nq+I a g++++Hi+D++i +GlQWp++l+ +a+R++gpp++RiTg++ p++g ++++eetg+rL+++A+e+gvpf++ Pavir.3NG316700.1.p 405 KKAFYLFSNQTIHAASLGKKKIHIVDYGIHYGLQWPCFLRRMACREGGPPEVRITGIDLPQPGfrPAQRVEETGRRLSSYAQEFGVPFRY 494 **********************************************************9*********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +vl+a+r+e+++ e+L+++p+E+l+Vn+++q ++l+desvs+es +rd Lk + +++P+ +++ + + +++ F++rf eal +ysa Pavir.3NG316700.1.p 495 QVLAASRMETIRAEDLNLDPEEVLIVNCIFQFENLMDESVSMESpsPRDVALKSIGRMRPHAFIHGVVNGSFSAPFFATRFREALFHYSA 584 ***************************************9989*************************************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 lfd l+++ pr+s +r+ +E+ ++gr++ nv+aceg++r+er et+++W+ r ++aG+k++pl+ ++ Pavir.3NG316700.1.p 585 LFDVLDETTPRDSTHRMLIEENIFGRAALNVIACEGTDRVERPETYRQWQVRNQRAGLKQLPLNPTT 651 *9999***************************************************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	58.839	290	672	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.6E-94	316	651	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MCSSYDRSPS RGAVADDLSF YLDLPPTPLQ CHQPNCRAAE SPEDMVLPFI SRMLMEEDID 60 DKFFYEYPDH PALLQAQQPF LDILSDDASS SPSAAGSGAS VTHPSTSSPN AADAPLHPAA 120 AVDCDAQFNG FDLDPAAFFS GGANSDLMSS AFLKGMEEAN RFLPSQDKLV IDPDPPDDAK 180 RFRFLRPAEN KQLAASGFDA AAPAAAVAVE VEEAVVAAPG GGVGGRGRKN RFDDDEDDLE 240 MHRRSSKQSA LQGDGDVFDK QHMITSQQMC VLVEQMEKLR IPTQEEAAAK KAAAAGGKAK 300 AKGGGGRRVG REVVDLRTLL LHCAQAVATD DRRGATELLK QIERHASAHG DAMQRLARCF 360 AEGLQARLAG TGSSTSTPPL MPKQRTPVVD MLQAYQLYMA AICFKKAFYL FSNQTIHAAS 420 LGKKKIHIVD YGIHYGLQWP CFLRRMACRE GGPPEVRITG IDLPQPGFRP AQRVEETGRR 480 LSSYAQEFGV PFRYQVLAAS RMETIRAEDL NLDPEEVLIV NCIFQFENLM DESVSMESPS 540 PRDVALKSIG RMRPHAFIHG VVNGSFSAPF FATRFREALF HYSALFDVLD ETTPRDSTHR 600 MLIEENIFGR AALNVIACEG TDRVERPETY RQWQVRNQRA GLKQLPLNPT TVQGWKGRIL 660 YAISTWVAND AAAAAGSCCF *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MCSSYDRSPS RGAVADDLSF YLDLPPTPLQ CHQPNCRAAE SPEDMVLPFI SRMLMEEDID  60
DKFFYEYPDH PALLQAQQPF LDILSDDASS SPSAAGSGAS VTHPSTSSPN AADAPLHPAA  120
AVDCDAQFNG FDLDPAAFFS GGANSDLMSS AFLKGMEEAN RFLPSQDKLV IDPDPPDDAK  180
RFRFLRPAEN KQLAASGFDA AAPAAAVAVE VEEAVVAAPG GGVGGRGRKN RFDDDEDDLE  240
MHRRSSKQSA LQGDGDVFDK QHMITSQQMC VLVEQMEKLR IPTQEEAAAK KAAAAGGKAK  300
AKGGGGRRVG REVVDLRTLL LHCAQAVATD DRRGATELLK QIERHASAHG DAMQRLARCF  360
AEGLQARLAG TGSSTSTPPL MPKQRTPVVD MLQAYQLYMA AICFKKAFYL FSNQTIHAAS  420
LGKKKIHIVD YGIHYGLQWP CFLRRMACRE GGPPEVRITG IDLPQPGFRP AQRVEETGRR  480
LSSYAQEFGV PFRYQVLAAS RMETIRAEDL NLDPEEVLIV NCIFQFENLM DESVSMESPS  540
PRDVALKSIG RMRPHAFIHG VVNGSFSAPF FATRFREALF HYSALFDVLD ETTPRDSTHR  600
MLIEENIFGR AALNVIACEG TDRVERPETY RQWQVRNQRA GLKQLPLNPT TVQGWKGRIL  660
YAISTWVAND AAAAAGSCCF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-39	320	648	8	329	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG316700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806963.1	0.0	scarecrow-like protein 34
TrEMBL	A0A3L6SY94	0.0	A0A3L6SY94_PANMI; Uncharacterized protein
STRING	Pavir.J38998.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-130	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.3NG316700.1.p