PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG316400.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 728aa MW: 80010.2 Da PI: 5.0665

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG316400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367.3	2.1e-112	346	717	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lL++cA+av+++d + a++lL++++++asp+gd++qRla++f+e+L+arla+++s +y++l +++ts +++ l+a++l+ + + Pavir.3NG316400.1.p 346 LRTLLIHCAQAVATDDRRSATELLKQIKQHASPQGDATQRLAHCFAEGLQARLAGTGSMVYQSLMAKRTS---VVDILQAYQLYMAAICF 432 6789**********************************************************999999...************* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 k+ ++ Nq+I++a g++++Hi+D++i +G+QWp++l+ +a+R++gpp++RiTg++ p++g ++++eetg+rL+k+A+e+gvpf++ Pavir.3NG316400.1.p 433 KKVVFIFSNQTIYNASLGKKKIHIVDYGIHYGIQWPCFLRRIACREGGPPEVRITGIDFPQPGfrPTQRIEETGRRLTKYAQEFGVPFKY 522 **********************************************************9*********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268 +vl+a+++e+++ e+L+++p+E+l+Vn+++q ++l+desv +es+rd L+ +++++P+ +++ + + +++ F++rf eal yysalf Pavir.3NG316400.1.p 523 QVLAASKMETIRAEDLNLDPEEVLIVNCIYQFKNLMDESVLIESPRDVALNNIRKMRPHAFIHGIVNGSFSAPFFVTRFREALFYYSALF 612 ************************************************************************************** PP GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 d l+++ pr+s++r+ +E+ ++gr++ nv+aceg++r+er et+++W+ r ++ G+k++pl+ ++++ ++ +++++ + + ++ ++++l Pavir.3NG316400.1.p 613 DVLDTTTPRDSNQRMLIEQNIFGRAALNVIACEGTDRVERPETYKQWQVRNQRTGLKQLPLNPNIMQVVRDKVKECYHKDFVIDIDHHWL 702 *************************************************************************889****** PP GRAS 359 vlgWkdrpLvsvSaW 373 ++gWk+r L+++S W Pavir.3NG316400.1.p 703 LQGWKGRILYAISTW 717 ************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.021	320	698	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.4E-110	346	717	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MDSSYDPSPS PGAGADDLAF YLSDLGPASP SAYLDLPPTP QHEKPQQQQQ YPQPNGGAAA 60 APEDMVLPFI SRMLMEEDID DKFFYEYPDH PALLQAQQPF LDILSDDASS SSPSAARSGS 120 GASVTHPSTS SSDAASTDAA DAANAPLTPA AVDSYPQFNG FDLDPAAFFS GGANSDLMSS 180 AFLKGMEEAN KFLPSQDKLV IDLDPPDDAK SFVLPAENKL AAAGFNGAAP VAAVAVKVEE 240 AVVAAPDAVP GGGVGGRGRK NRFDDDEEDL EMDRRSSKQS ALQGDGDDRD VFDKYMITSH 300 EMCVEQMEKL RIAMQEEAAK KDAAAGGGNA KAKGGGRRGG REVVDLRTLL IHCAQAVATD 360 DRRSATELLK QIKQHASPQG DATQRLAHCF AEGLQARLAG TGSMVYQSLM AKRTSVVDIL 420 QAYQLYMAAI CFKKVVFIFS NQTIYNASLG KKKIHIVDYG IHYGIQWPCF LRRIACREGG 480 PPEVRITGID FPQPGFRPTQ RIEETGRRLT KYAQEFGVPF KYQVLAASKM ETIRAEDLNL 540 DPEEVLIVNC IYQFKNLMDE SVLIESPRDV ALNNIRKMRP HAFIHGIVNG SFSAPFFVTR 600 FREALFYYSA LFDVLDTTTP RDSNQRMLIE QNIFGRAALN VIACEGTDRV ERPETYKQWQ 660 VRNQRTGLKQ LPLNPNIMQV VRDKVKECYH KDFVIDIDHH WLLQGWKGRI LYAISTWVAN 720 DDAGSYF*

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MDSSYDPSPS PGAGADDLAF YLSDLGPASP SAYLDLPPTP QHEKPQQQQQ YPQPNGGAAA  60
APEDMVLPFI SRMLMEEDID DKFFYEYPDH PALLQAQQPF LDILSDDASS SSPSAARSGS  120
GASVTHPSTS SSDAASTDAA DAANAPLTPA AVDSYPQFNG FDLDPAAFFS GGANSDLMSS  180
AFLKGMEEAN KFLPSQDKLV IDLDPPDDAK SFVLPAENKL AAAGFNGAAP VAAVAVKVEE  240
AVVAAPDAVP GGGVGGRGRK NRFDDDEEDL EMDRRSSKQS ALQGDGDDRD VFDKYMITSH  300
EMCVEQMEKL RIAMQEEAAK KDAAAGGGNA KAKGGGRRGG REVVDLRTLL IHCAQAVATD  360
DRRSATELLK QIKQHASPQG DATQRLAHCF AEGLQARLAG TGSMVYQSLM AKRTSVVDIL  420
QAYQLYMAAI CFKKVVFIFS NQTIYNASLG KKKIHIVDYG IHYGIQWPCF LRRIACREGG  480
PPEVRITGID FPQPGFRPTQ RIEETGRRLT KYAQEFGVPF KYQVLAASKM ETIRAEDLNL  540
DPEEVLIVNC IYQFKNLMDE SVLIESPRDV ALNNIRKMRP HAFIHGIVNG SFSAPFFVTR  600
FREALFYYSA LFDVLDTTTP RDSNQRMLIE QNIFGRAALN VIACEGTDRV ERPETYKQWQ  660
VRNQRTGLKQ LPLNPNIMQV VRDKVKECYH KDFVIDIDHH WLLQGWKGRI LYAISTWVAN  720
DDAGSYF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-44	350	717	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.25004	1e-172	callus\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG316400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807224.1	0.0	scarecrow-like protein 34
TrEMBL	A0A3L6SY94	0.0	A0A3L6SY94_PANMI; Uncharacterized protein
STRING	Sb08g018940.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-159	GRAS family protein

Link Out ? help Back to Top
Phytozome	Pavir.3NG316400.1.p