PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG310200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 414aa    MW: 44234.4 Da    PI: 7.5524
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG310200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.5e-31100153255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pavir.3NG310200.1.p 100 PRMRWTTALHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 153
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-1598153IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-2898153IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-23100153IPR006447Myb domain, plants
PfamPF002493.5E-7101152IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MATPDLSLHI RPPSPAATAG EMQAVEPRLL LGLELDTAAA PPPAVMKADD AAAQRHGGLQ  60
QVQRRRRPLH QPSQTAHGFK KSSGGTGGGG GGGRRSARAP RMRWTTALHA HFVHAVELLG  120
GHERATPKSV LELMNVKDLT LAHVKSHLQM YRTVKGTDRS CFAGHGQARD MAFLRRGAAG  180
EVDGFDVFNS NSSVNTTTTF NNDTARRSRS PSGELEQQRL DHQEAAAAAC AWIHAHQRLQ  240
SCDELTLQPP PCRLRPAADR LLTTTTTEQQ CQQQGSKGGE QDHLGEGAVV VHHLADETPE  300
KLPSPAPPHD HHAGSGFFQL PSPTNNTSSS GDTASSSEWL QQRRHYCSGG GGMSVRLPAA  360
GLSAPPPPPS LEMSLGRQGW QMEQHVGAEF EFEFESSSPA AAAPNELAML KCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-16101155357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-16101155357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-16101155357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-16101155357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG310200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1002033e-93FP100203.1 Phyllostachys edulis cDNA clone: bphylf053h02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805465.10.0uncharacterized protein LOC112884302
TrEMBLA0A2T7EIQ00.0A0A2T7EIQ0_9POAL; Uncharacterized protein
STRINGPavir.J09156.1.p1e-146(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.23e-38G2-like family protein