PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG307900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 585aa    MW: 66287.8 Da    PI: 9.685
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG307900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.5e-18443492255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+ +a+ +l+g
  Pavir.3NG307900.1.p 443 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFATAEEAALAYGQAAYCLRG 492
                          59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF561122.8E-7013315IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.202.6E-122679No hitNo description
SMARTSM002201.6E-2637315IPR000719Protein kinase domain
PROSITE profilePS5001135.12837315IPR000719Protein kinase domain
PfamPF000692.9E-4238310IPR000719Protein kinase domain
Gene3DG3DSA:3.30.200.202.6E-580124No hitNo description
Gene3DG3DSA:1.10.510.102.0E-46125312No hitNo description
PROSITE patternPS001080163175IPR008271Serine/threonine-protein kinase, active site
CDDcd000181.03E-28442502No hitNo description
Gene3DG3DSA:3.30.730.101.6E-30443501IPR001471AP2/ERF domain
SMARTSM003807.3E-33443506IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-21443501IPR016177DNA-binding domain
PROSITE profilePS5103221.918443500IPR001471AP2/ERF domain
PRINTSPR003672.8E-10444455IPR001471AP2/ERF domain
PfamPF008474.2E-12444492IPR001471AP2/ERF domain
PRINTSPR003672.8E-10466482IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MEDESGEHNK RESILHNQRL NLQSLSLKDL RDITNDFSDE RLLGQGGFGR VYKGALENGD  60
PIDDKQYENE ARHLMRLKHP NIVQLVGYCC ETEKELVMHN GTYVHAEKSE RLLCLEYLPN  120
GSLCKHLSDA SSVLDWDTRY KIIRGICDGL HYLHEEWQAG TPIIHRDLKP ANILLDNNMV  180
PKIADFGLSR LFGELQTRII TKNQYGTLGY MSPEYLYRGI ISKELDIFSL GVIIIEIITG  240
DKNYPDKVET SSQEFIELVS TYNWKNRPVN AQGYTSREFD CQQIRRCIEN GLLCVKLDRA  300
ERPTTRQIIE MLAWCGAECS NKREKRLAQP GSTSNVDQHI RRAADYFNKE EDPRMSKQGP  360
QMAAAVNLPG PGEDLMRALE PFLLADAPPS PLVMPPATHL TPAQMQFIQA QLHLQRNPGL  420
GPRAQPMKPA VPVPAAARRP QKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTFATAEEAA  480
LAYGQAAYCL RGDAARLNFP DVAASRAPVG PAVDAKLQAI CATNHHRRRV VVVQGPREAG  540
PSRWRTRGPR ATAPALPTRA RCPGRKTRCP TPRRRRRRRW GSWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cth_A8e-47213121287Concanavalin A-like lectin protein kinase family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1572578RRRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.422011e-153callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG307900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7423451e-134KP742345.1 Saccharum spontaneum NAC1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805317.11e-169uncharacterized protein LOC112884175 isoform X1
RefseqXP_025805318.11e-170uncharacterized protein LOC112884175 isoform X2
TrEMBLA0A2T7EHW41e-180A0A2T7EHW4_9POAL; Uncharacterized protein
TrEMBLA0A2T7EHX01e-180A0A2T7EHX0_9POAL; Uncharacterized protein
STRINGPavir.Ca02643.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.16e-25ERF family protein