PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG306100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 303aa MW: 32997.6 Da PI: 4.7497 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.4 | 8.3e-11 | 230 | 270 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Pavir.3NG306100.1.p 230 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 270 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.799 | 220 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-14 | 220 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-12 | 225 | 281 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-11 | 226 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.26E-12 | 229 | 274 | No hit | No description |
Pfam | PF00010 | 3.8E-8 | 230 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEAGGLIAEV GWTAFDFLSH GEESEVMAQL LGAFPSHGEE GHHELPWSDQ ASNAYSDNIG 60 SSLAVPPAYE GYCFSDSNEA LRISSCIAPD DLSSVQEYSA TEFVNMFSNH SPNFYGNGDG 120 SCEDLDDPSM IMLDSVSATN KRKHLAEELD GKTRGRKCAR KGETKRTKRA KRSGDEDASM 180 AIASGSPTSC CTSDSDSNGS LESADADARP KGKARAGRGA TTEPQSIYAR KRRERINERL 240 KILQNLVPNG TKVDISTMLE EAVHYVKFLQ LQIRLLSSDD MWMYAPIAYN GMNIGIDLNM 300 DR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG306100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY661659 | 5e-48 | AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806266.1 | 0.0 | transcription factor bHLH139-like isoform X1 | ||||
Refseq | XP_025806267.1 | 0.0 | transcription factor bHLH139-like isoform X1 | ||||
TrEMBL | A0A2S3HF40 | 0.0 | A0A2S3HF40_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00430.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4310 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 4e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG306100.1.p |