PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG305400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 374aa    MW: 39560 Da    PI: 9.2452
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG305400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.3e-32233288156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W+peLH+rFv a+++LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Pavir.3NG305400.1.p 233 KARRCWSPELHRRFVAALQRLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 288
                          68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-29230291IPR009057Homeodomain-like
SuperFamilySSF466891.65E-17230291IPR009057Homeodomain-like
PROSITE profilePS5129413.312230290IPR017930Myb domain
TIGRFAMsTIGR015572.3E-26233288IPR006447Myb domain, plants
PfamPF002495.3E-7235286IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MMARKEDHHH LRALAARAVT DSLRAAAPTA AERAARFEDC VRSLEAEKAK MDVFRRELPI  60
SVHLVADVIE WLKEELAQHR RPAPAPAPEL FAPVATAPAA AKRKAAPEGA AVKAEADAND  120
KRSWMSSAQL WSCGSHDGST DATNGAAAAA KPARKVSGAF MSPTLARSPD DGAEKPTALP  180
VPDLTLSSPA VDAACPAAPS ATSSAVTDGG AAAQRQRQRH QQQQQQQQAQ QRKARRCWSP  240
ELHRRFVAAL QRLGGAQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RASSSDGGDL  300
AAAGLWVAPE QQYATSQHST SQSGSPQGAL QLTVSSRAMS ATAGDSCDGD EAEGGRSESY  360
GFGAQHGTKA SSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-13233286154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-13233286154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-13233286154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-13233286154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.218550.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG305400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809801.11e-173transcription factor NIGTH1-like
TrEMBLA0A1E5VCU61e-179A0A1E5VCU6_9POAL; Myb family transcription factor EFM
STRINGPavir.J13382.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-29G2-like family protein