PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG305200.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 398aa    MW: 41327.6 Da    PI: 10.8084
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG305200.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.8e-28261316156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W+p+L ++Fv a++qLGG+++AtPk+i++lmkv gLt ++vkSHLQkYRl+
  Pavir.3NG305200.4.p 261 KARRCWSPKLRRQFVVAIQQLGGAQVATPKKIRQLMKVYGLTHDEVKSHLQKYRLH 316
                          68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.037258318IPR017930Myb domain
SuperFamilySSF466891.67E-15258319IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-26258319IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-22261316IPR006447Myb domain, plants
PfamPF002491.9E-5263314IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
NGKNCKNPIL SPPFSRAPLP YPGRHRPPSP LPSTRPLPPL RSTTTPRPAP VAAAGPPPPS  60
PLRHPLPSDP ERCAAARAQG GRQSAGAAAV QGHVLPNALD STAIDWVNAA ELPSPVNPGS  120
AVRLTLAKVK EGVELAQHRR PAPAPAPELF APVAAAPAAA KRKAAPEGAA VKAEADANAK  180
PARKVSGAFM PPMLARSPDD SAEKPAALPV PDLTLSSPAI DAACPAAPSA TSSAVTDGGT  240
VAQRLRQRQH HQQQQPAQQR KARRCWSPKL RRQFVVAIQQ LGGAQVATPK KIRQLMKVYG  300
LTHDEVKSHL QKYRLHTRRA SSSDGGDLQA APEQQDATSQ HSMSQSGSPQ GPLQLTVSSR  360
AMSAATAGDS CDGDEAEGGR SESYGFGAQH GTKASLS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.327781e-157root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG305200.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0790381e-33AC079038.3 Oryza sativa chromosome 7 clone OSJNBb0024A20, complete sequence.
GenBankAK0673301e-33AK067330.1 Oryza sativa Japonica Group cDNA clone:J013101E17, full insert sequence.
GenBankAK1042941e-33AK104294.1 Oryza sativa Japonica Group cDNA clone:001-007-H07, full insert sequence.
GenBankAK1044061e-33AK104406.1 Oryza sativa Japonica Group cDNA clone:006-203-D12, full insert sequence.
GenBankAK1049371e-33AK104937.1 Oryza sativa Japonica Group cDNA clone:001-106-B09, full insert sequence.
GenBankAK1061251e-33AK106125.1 Oryza sativa Japonica Group cDNA clone:001-207-F03, full insert sequence.
GenBankAP0058951e-33AP005895.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0018L13.
GenBankAP0149631e-33AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-33CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8296041e-33CT829604.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121F06, full insert sequence.
GenBankCT8315881e-33CT831588.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA037D17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809801.11e-105transcription factor NIGTH1-like
TrEMBLA0A3L6R6G71e-104A0A3L6R6G7_PANMI; Putative transcription factor GLK2 isoform X1
STRINGPavir.Cb00438.1.p1e-150(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-24G2-like family protein