PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG305200.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 209aa MW: 22090.6 Da PI: 9.8905

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG305200.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.3	1.7e-28	72	127	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+L ++Fv a++qLGG+++AtPk+i++lmkv gLt ++vkSHLQkYRl+ Pavir.3NG305200.3.p 72 KARRCWSPKLRRQFVVAIQQLGGAQVATPKKIRQLMKVYGLTHDEVKSHLQKYRLH 127 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-26	69	130	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.037	69	129	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-16	69	130	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-23	72	127	IPR006447	Myb domain, plants
Pfam	PF00249	6.6E-6	74	125	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MPPMLARSPD DSAEKPAALP VPDLTLSSPA IDAACPAAPS ATSSAVTDGG TVAQRLRQRQ 60 HHQQQQPAQQ RKARRCWSPK LRRQFVVAIQ QLGGAQVATP KKIRQLMKVY GLTHDEVKSH 120 LQKYRLHTRR ASSSDGGDLQ AAPEQQDATS QHSMSQSGSP QGPLQLTVSS RAMSAATAGD 180 SCDGDEAEGG RSESYGFGAQ HGTKASLS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.32778	1e-158	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG305200.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809801.1	5e-97	transcription factor NIGTH1-like
TrEMBL	A0A2S3HF01	1e-95	A0A2S3HF01_9POAL; Uncharacterized protein
STRING	Pavir.Cb00438.1.p	1e-147	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-26	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.3NG305200.3.p