PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3NG305200.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 267aa MW: 28808.5 Da PI: 10.0841

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3NG305200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.7	2.5e-28	130	185	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+L ++Fv a++qLGG+++AtPk+i++lmkv gLt ++vkSHLQkYRl+ Pavir.3NG305200.2.p 130 KARRCWSPKLRRQFVVAIQQLGGAQVATPKKIRQLMKVYGLTHDEVKSHLQKYRLH 185 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-26	127	188	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.72E-16	127	188	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.037	127	187	IPR017930	Myb domain
TIGRFAMs	TIGR01557	8.6E-23	130	185	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-5	132	183	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MPNLVSFVHP SILIRLTLFG QEPRAVYIHI ICSYKSFMHH MSSHLLWRIP NNQVSGAFMP 60 PMLARSPDDS AEKPAALPVP DLTLSSPAID AACPAAPSAT SSAVTDGGTV AQRLRQRQHH 120 QQQQPAQQRK ARRCWSPKLR RQFVVAIQQL GGAQVATPKK IRQLMKVYGL THDEVKSHLQ 180 KYRLHTRRAS SSDGGDLQAA PEQQDATSQH SMSQSGSPQG PLQLTVSSRA MSAATAGDSC 240 DGDEAEGGRS ESYGFGAQHG TKASLS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.32778	1e-158	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3NG305200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809801.1	3e-99	transcription factor NIGTH1-like
TrEMBL	A0A2S3HF01	7e-98	A0A2S3HF01_9POAL; Uncharacterized protein
TrEMBL	A0A2T7EIK7	8e-98	A0A2T7EIK7_9POAL; Uncharacterized protein
STRING	Pavir.Cb00438.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pavir.3NG305200.2.p