PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG305200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 402aa    MW: 41854.3 Da    PI: 10.7457
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG305200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.84.8e-28265320156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W+p+L ++Fv a++qLGG+++AtPk+i++lmkv gLt ++vkSHLQkYRl+
  Pavir.3NG305200.1.p 265 KARRCWSPKLRRQFVVAIQQLGGAQVATPKKIRQLMKVYGLTHDEVKSHLQKYRLH 320
                          68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.7E-26262323IPR009057Homeodomain-like
SuperFamilySSF466892.6E-15262323IPR009057Homeodomain-like
PROSITE profilePS5129410.037262322IPR017930Myb domain
TIGRFAMsTIGR015571.6E-22265320IPR006447Myb domain, plants
PfamPF002491.9E-5267318IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
IIHYNGKNCK NPILSPPFSR APLPYPGRHR PPSPLPSTRP LPPLRSTTTP RPAPVAAAGP  60
PPPSPLRHPL PSDPERCAAA RAQGGRQSAG AAAVQGHVLP NALDSTAIDW VNAAELPSPV  120
NPGSAVRLTL AKVKEGVELA QHRRPAPAPA PELFAPVAAA PAAAKRKAAP EGAAVKAEAD  180
ANAKPARKVS GAFMPPMLAR SPDDSAEKPA ALPVPDLTLS SPAIDAACPA APSATSSAVT  240
DGGTVAQRLR QRQHHQQQQP AQQRKARRCW SPKLRRQFVV AIQQLGGAQV ATPKKIRQLM  300
KVYGLTHDEV KSHLQKYRLH TRRASSSDGG DLQAAPEQQD ATSQHSMSQS GSPQGPLQLT  360
VSSRAMSAAT AGDSCDGDEA EGGRSESYGF GAQHGTKASL S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.327781e-157root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG305200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0790381e-33AC079038.3 Oryza sativa chromosome 7 clone OSJNBb0024A20, complete sequence.
GenBankAK0673301e-33AK067330.1 Oryza sativa Japonica Group cDNA clone:J013101E17, full insert sequence.
GenBankAK1042941e-33AK104294.1 Oryza sativa Japonica Group cDNA clone:001-007-H07, full insert sequence.
GenBankAK1044061e-33AK104406.1 Oryza sativa Japonica Group cDNA clone:006-203-D12, full insert sequence.
GenBankAK1049371e-33AK104937.1 Oryza sativa Japonica Group cDNA clone:001-106-B09, full insert sequence.
GenBankAK1061251e-33AK106125.1 Oryza sativa Japonica Group cDNA clone:001-207-F03, full insert sequence.
GenBankAP0058951e-33AP005895.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBb0018L13.
GenBankAP0149631e-33AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126151e-33CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8296041e-33CT829604.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA121F06, full insert sequence.
GenBankCT8315881e-33CT831588.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA037D17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809801.11e-105transcription factor NIGTH1-like
TrEMBLA0A3L6R6G71e-104A0A3L6R6G7_PANMI; Putative transcription factor GLK2 isoform X1
STRINGPavir.Cb00438.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55823353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.12e-24G2-like family protein