PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG295100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 373aa    MW: 38888.6 Da    PI: 9.4021
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG295100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.77.3e-30117170155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          +prl+Wtp+LH+rFv+av++L G+++A Pkti++lm+v+gLt+e+v+SHLQkYRl
  Pavir.3NG295100.1.p 117 RPRLVWTPQLHKRFVDAVAHL-GIKNAMPKTIMQLMSVDGLTRENVASHLQKYRL 170
                          59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.726114173IPR017930Myb domain
SuperFamilySSF466891.61E-19115174IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29116175IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23118170IPR006447Myb domain, plants
PfamPF002493.1E-7120169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MPNLRKLKLA FNASNADQQS TIPVGIEYLS ELKEVSAKIC GVGPEESHRR AAELAFRDAI  60
RVHDRFQRVN VQCVKQIIEC KDDQSSITTV EYSPHDSIPR NRGGGGGSDE PARMLKRPRL  120
VWTPQLHKRF VDAVAHLGIK NAMPKTIMQL MSVDGLTREN VASHLQKYRL YHKRMQGLGG  180
GGGGGGCAGG SHSSGSGTDA ATEHLFATGP VPFLPYPCPP FAPMGAAHHH HHHAPQIGHF  240
HHPAARPLGH YGPTGAGFDH GFLSRAVGAG APPVGPPGMH HHRMMAPASF ADDMDLGSRG  300
GPGGLYLKRM QGLSGGGGRG AGGKHSASGT DSTGGSGTTN SAVTFDATHT HSIGTDSTGG  360
SGTTSSGTDA SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A9e-32117173157Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.150970.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG295100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0605851e-131BT060585.2 Zea mays full-length cDNA clone ZM_BFb0019C20 mRNA, complete cds.
GenBankBT0865881e-131BT086588.1 Zea mays full-length cDNA clone ZM_BFc0188H07 mRNA, complete cds.
GenBankJX4699871e-131JX469987.1 Zea mays subsp. mays clone UT3347 G2-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808059.17e-86transcription factor MYBC1 isoform X2
TrEMBLA0A2T7EDU41e-84A0A2T7EDU4_9POAL; Uncharacterized protein
TrEMBLA0A2T8KJR22e-84A0A2T8KJR2_9POAL; Uncharacterized protein
STRINGGRMZM2G471600_P013e-78(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.13e-41G2-like family protein