PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG293700.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 223aa MW: 24694.6 Da PI: 10.6329 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48 | 2.2e-15 | 78 | 128 | 3 | 55 |
HHHHHHHH.HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerEr.rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h+ E+ rRR++iN++f +L++l+P + ++kK + ++Le++++Y+ksLq Pavir.3NG293700.2.p 78 ETHSLTEKvRRRRKINEKFKTLQQLVPGC---DNKKSNQTSTLEQTIKYMKSLQ 128 57888898678899***************...*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.37 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.61E-13 | 78 | 132 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.9E-17 | 78 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-16 | 78 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-13 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-13 | 81 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MNIYLIYGAK IHLGFQTIVK SLQLQFKHTT RDIYIINNNR NSCAGGTKNH TIFFWQDTVC 60 NCSGRGKQRG GTKSHHSETH SLTEKVRRRR KINEKFKTLQ QLVPGCDNKK SNQTSTLEQT 120 IKYMKSLQHQ IQAMSFWCRI KPASAALLHP VDVPPPYYYP AAAAGALPLP PPAAFALDPG 180 FPVRGHAWKA PGVVLGPPPP TSSMLPAFAA ARRSHCSHLT LQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG293700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2T7EIY7 | 1e-30 | A0A2T7EIY7_9POAL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28800.1 | 2e-15 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG293700.2.p |