PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG293700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 297aa    MW: 30489.1 Da    PI: 6.4167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG293700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-081651901139
                          HHHHHHHHHHHHHHCTSCCC...TTS-ST CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKls 39 
                          rRR++iN++f +L++l+P +   ++kKl+
  Pavir.3NG293700.1.p 165 RRRRKINEKFKTLQQLVPGC---DNKKLT 190
                          78889***************...9***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.1E-7164190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-5164193No hitNo description
SuperFamilySSF474591.7E-6165191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5165190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEMVTSSQDA GPPALSDHGG EATGAAAADD GGGSGAGFLE MFFGDLHSSG SGDLFELVWH  60
GGGPAGRSCR TEATTQAAGG GSSSRLPSSS SLPPPADQPP SEDEMAAWLF AIVRGDGVEH  120
AVAGLGDKPG AGGGDDVAAG RGEDDQLVPT AKEAATKTQV KCNERRRRKI NEKFKTLQQL  180
VPGCDNKKLT TQDQNHSSLK TEGRVQAMSF WCRIKPASAA LLHPVDVPPP YYYPAAAAGA  240
LPLPPPAAFA LDPGFPVRGH AWKAPGVVLG PPPPTSSMLP AFAAARRSHC SHLTLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG293700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165781111