PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG286100.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 443aa MW: 47115.1 Da PI: 6.6404 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54.2 | 2.7e-17 | 250 | 296 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ +L+el+P++ K +Ka++L +A+eY+ksLq Pavir.3NG286100.4.p 250 VHNLSERRRRDRINERMKTLQELIPHC-----NKTDKASMLDEAIEYLKSLQ 296 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.6E-21 | 243 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.91E-11 | 243 | 300 | No hit | No description |
SuperFamily | SSF47459 | 4.32E-21 | 244 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.698 | 246 | 295 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-14 | 250 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.8E-19 | 252 | 301 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MNQYVPDWSS SMGEAFATLN GDDEGLMELL WCNGHVVMQS QAPGKPTRPE KVAAAAAAVV 60 QDDEAAAWFQ YPAEDALERD LFTELFGEEQ AECAAHRSAM MTPPPREKAC PGDLGDVSHA 120 AAARAAAGGE CAATTTEAVV ESSMLTVGSS FCGSNHVQTP RARAGAPPPG AAGKSGGRAR 180 DAATVTSSSM RPPSCTTRTG QPGATAHRSG KRNKPSDAAE TEDAEFQSAD ATCEPAQKLT 240 TAKRRRAAEV HNLSERRRRD RINERMKTLQ ELIPHCNKTD KASMLDEAIE YLKSLQLQLQ 300 MMWMGGGMAA AAPVMFPAGV HQYMQRMVAP SHVASMPRMP FMAPPAVQSP PGADPYARYL 360 AVDHLQPPPP PAAAAPMHYL QGMGFYQQQQ QQQQSPAPPP PPPPAVPASS LPAATARTSP 420 PDGTLHKKYE NCGKPEIQCI TS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 243 | 258 | RRRAAEVHNLSERRRR |
2 | 254 | 259 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00606 | ChIP-seq | Transfer from AT2G43010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG286100.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360963 | 2e-82 | AK360963.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129K08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805663.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X3 | ||||
TrEMBL | A0A2S3HFC1 | 0.0 | A0A2S3HFC1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00224.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43010.1 | 2e-27 | phytochrome interacting factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG286100.4.p |