PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG286100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 469aa    MW: 50247.8 Da    PI: 7.139
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG286100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH542.9e-17250296455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++ +L+el+P++      K +Ka++L +A+eY+ksLq
  Pavir.3NG286100.1.p 250 VHNLSERRRRDRINERMKTLQELIPHC-----NKTDKASMLDEAIEYLKSLQ 296
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.16E-11243300No hitNo description
Gene3DG3DSA:4.10.280.109.3E-21243303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-21244306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.698246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-14250296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-19252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MNQYVPDWSS SMGEAFATLN GDDEGLMELL WCNGHVVMQS QAPGKPTRPE KVAAAAAAVV  60
QDDEAAAWFQ YPAEDALERD LFTELFGEEQ AECAAHRSAM MTPPPREKAC PGDLGDVSHA  120
AAARAAAGGE CAATTTEAVV ESSMLTVGSS FCGSNHVQTP RARAGAPPPG AAGKSGGRAR  180
DAATVTSSSM RPPSCTTRTG QPGATAHRSG KRNKPSDAAE TEDAEFQSAD ATCEPAQKLT  240
TAKRRRAAEV HNLSERRRRD RINERMKTLQ ELIPHCNKTD KASMLDEAIE YLKSLQLQLQ  300
MMWMGGGMAA AAPVMFPAGV HQYMQRMVAP SHVASMPRMP FMAPPAVQSP PGADPYARYL  360
AVDHLQPPPP PAAAAPMVPP IRRWTSATMH ARMPPLFPER FQQHYLQGMG FYQQQQQQQQ  420
SPAPPPPPPP AVPASSLPAA TARTSPPDGT LHKKYENCGK PEIQCITS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243258RRRAAEVHNLSERRRR
2254259ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG286100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609632e-82AK360963.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805663.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X3
TrEMBLA0A2S3HFC10.0A0A2S3HFC1_9POAL; Uncharacterized protein
STRINGPavir.Cb00224.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.23e-27phytochrome interacting factor 4