PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG283000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 854aa MW: 92999.2 Da PI: 6.8117 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.9e-18 | 23 | 80 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L + + +++ +q+kvWFqNrR +ek+ Pavir.3NG283000.1.p 23 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 80 6789****************************************************97 PP | |||||||
2 | START | 161.1 | 8.6e-51 | 172 | 379 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+++e+++ka+ ++ +Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +e++ v+ +g g Pavir.3NG283000.1.p 172 IAEETLAEFMSKATGTAVNWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRHVEIVHVVPTGngG 260 68999*****************************************************.8888888888********************* PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +++l++++++al++l Rdf+++Ry+ l +g++vi+++S+++ + p + ++Rae+lpSg+li+p+++g+s + +v+hvdl+++ Pavir.3NG283000.1.p 261 TIELIYMQTYALTTLTGpRDFWTLRYTSGLDDGSLVICERSLTQSTGGPCgpnAPTFIRAEVLPSGYLIRPCDGGGSMIYIVDHVDLNAK 350 *************99988****************************98887889************************************ PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqc 204 +++++lr+l++s + ++k++ a+l++ + Pavir.3NG283000.1.p 351 SVPEVLRPLYESPKILAQKMTAAALRHIR 379 ************************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.24 | 17 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.5E-15 | 19 | 85 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.71E-16 | 20 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.60E-15 | 22 | 82 | No hit | No description |
Pfam | PF00046 | 9.7E-16 | 23 | 80 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-18 | 24 | 80 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 2.40E-6 | 74 | 113 | No hit | No description |
PROSITE profile | PS50848 | 27.519 | 162 | 362 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.0E-23 | 170 | 354 | IPR023393 | START-like domain |
SMART | SM00234 | 5.7E-42 | 171 | 381 | IPR002913 | START domain |
Pfam | PF01852 | 8.4E-49 | 172 | 379 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.16E-36 | 172 | 382 | No hit | No description |
Pfam | PF08670 | 8.2E-38 | 710 | 852 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 854 aa Download sequence Send to blast |
MAAVASRERL SPGSAPQVDT GKYVRYTPEQ VEALERVYSE CPKPSSLRRQ QLIRDCPILS 60 NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLSAMNKL LMEENDRLQK QVSRLVYDNG 120 YMKNQLHSPS VATTDTSCES VVTSSQHYQP QNPAVPPPPK RDANNPAGLL AIAEETLAEF 180 MSKATGTAVN WVQMVGMKPG PDSIGIIAVS HNCSGVAARA CGLVSLEPTK VAEILKDRPS 240 WYRDCRHVEI VHVVPTGNGG TIELIYMQTY ALTTLTGPRD FWTLRYTSGL DDGSLVICER 300 SLTQSTGGPC GPNAPTFIRA EVLPSGYLIR PCDGGGSMIY IVDHVDLNAK SVPEVLRPLY 360 ESPKILAQKM TAAALRHIRQ IAHESSGEIP YGAGRQPAVL RTFSQRLSRG FNDAVSGFPD 420 DGWSPLLSSD GPEDITITVN SSPNKLVGSH VSPSPFFSAI GSGIMCAKAS MLLQNVPPAL 480 LVQFLREHRS EWTDPGVDAY SAASLRANPY AVPGLRAGGF IGNQVILPLA RTLEHEESLE 540 VIRLEGHGFS HDEVLLSRDM FLLQLCSGVD ENAPGACAQL VFAPIDESFA DDAPLLPSGF 600 RVIPLDDKMD MPSATRTLDL ASALEVGSGA GLRAPSNASG ACTTRSVLTI AFQFSFENHL 660 RESVAAMARQ YVRGVMASVQ RVAMAIAPTR LGSHIQLKHP HPPGSPEALA LATWIAKSYR 720 VHTGMEIRWS DTEGAENPLM PFWKHSDAIL CCSLKPPFTL KFANSAGFDI LESTMVNIQD 780 MPLEAVLDDE GRKALFTELP KIMQQGWAYL PGGACQSSMG RQASYEQVVT WKVVGDDGVP 840 QGLALMLSNW TFI* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG283000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067483 | 0.0 | BT067483.1 Zea mays full-length cDNA clone ZM_BFc0058F09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808876.1 | 0.0 | homeobox-leucine zipper protein HOX33-like | ||||
Swissprot | A2ZMN9 | 0.0 | HOX33_ORYSI; Homeobox-leucine zipper protein HOX33 | ||||
Swissprot | Q2QM96 | 0.0 | HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33 | ||||
TrEMBL | A0A2S3HFV4 | 0.0 | A0A2S3HFV4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00023.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG283000.1.p |
Publications ? help Back to Top | |||
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