PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pavir.3NG281900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ARF | ||||||||
Protein Properties | Length: 894aa MW: 98243.1 Da PI: 6.1175 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.3 | 2.9e-23 | 129 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ ++++ + +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+++F Pavir.3NG281900.1.p 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPVQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSIIFI 216 99*****************************85545444..8************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ Pavir.3NG281900.1.p 217 --WNDNSQLLLGIRRA 230 ..66666679999997 PP | |||||||
2 | Auxin_resp | 111.7 | 7.2e-37 | 255 | 338 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+ r pnS+Wrs+k Pavir.3NG281900.1.p 255 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSERCPNSHWRSVK 338 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.7E-47 | 117 | 258 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-42 | 121 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.98E-22 | 128 | 229 | No hit | No description |
Pfam | PF02362 | 2.1E-21 | 129 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.4E-25 | 129 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.576 | 129 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.7E-32 | 255 | 338 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-7 | 757 | 845 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 9.81E-7 | 759 | 835 | No hit | No description |
PROSITE profile | PS51745 | 23.182 | 760 | 844 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 894 aa Download sequence Send to blast |
MNLSPSKMAE PSPESDGEQR CLNSELWHAC AGPLVSLPMV GSRVVYFPQG HSEQVAASTN 60 KEVDAQIPNY PNLPPQLICQ LHNVTMHADV ETEEVYAQMT LQPLSPEEQK EPFLPIELGA 120 GSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF SQQPPVQELI ARDLHDNEWK 180 FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DSIIFIWNDN SQLLLGIRRA NRPQTVMPSS 240 VLSSDSMHIG LLAAAAHAAA TNSRFTIFYN PRASPSEFVI PLAKYVKAVY HTRVSVGMRF 300 RMLFETEESS VRRYMGTITG ISDLDSERCP NSHWRSVKVG WDESTAGDKQ PRVSLWEIEP 360 LTTFPMYPTA FPLRLKRPWA SGLPMFNGGR SDEFARYSSL MWLRDGSRGS QSLNFQGLGV 420 SPWLQPRMDY PLLGLKPDTY QQMAAAALEE IRGGDHLKQT SSLLAVQQTQ NLNGGLDPLY 480 GNPVLQQMQF QSQQSPLQAV QQGYGQNTGN SGFLQSQLQL QKQQEPPPPH QQQTQQVLQQ 540 QSHQDMQQHL SSSCHDITNV ASSMSEAVSA SESQSSLLSG SSFYQQNIFE GNSGPGLHLH 600 NSFHNFSSQE ASNLLNLPRS SQLMASEGWP SKRMAVEPLA NLEAQSVQHK LEKVSHQSNV 660 SHISGTLAPL SARDGSSAQA LSTNVQSHLL SSSFAIHDGM TTVRGDGVGS GTDAITIASL 720 RYSDVNLLPE NSLATSSCLG ESGTFSSLND VCGVNPSQGG TFVKVYKSGS LGRSLDITRF 780 SSYYELRSEL ERLFGLEGQL EDPVRSGWQL VFVDRENDIL LVGDDPWQEF VNSVWCIKIL 840 SPQDVQQMVR GGDGLLSTPG ATMLQGNACD DYSASHSMQN LTGSIAPVVP LDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 14 | 359 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pvr.2309 | 0.0 | callus| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pavir.3NG281900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727963 | 0.0 | KJ727963.1 Zea mays clone pUT6075 ARF transcription factor (ARF34) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806869.1 | 0.0 | auxin response factor 25-like | ||||
Swissprot | Q2QM84 | 0.0 | ARFY_ORYSJ; Auxin response factor 25 | ||||
TrEMBL | A0A3L6T080 | 0.0 | A0A3L6T080_PANMI; Auxin response factor | ||||
STRING | Pavir.Ca02838.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12712 | 29 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Pavir.3NG281900.1.p |
Publications ? help Back to Top | |||
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