PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG279000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 288aa    MW: 30059.7 Da    PI: 6.3536
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG279000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.41.1e-33301431102
                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesss 79 
                          aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+ieWL+++a  ai+el+++           ss++a  + +++++
  Pavir.3NG279000.1.p  30 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIRAAAGAIDELPSLdcsfalpvgasSSPPA--AGDDAEV 117
                          6899*************************************************************9999998865322222..2233333 PP

                  TCP  80 ssasnsssg..........kaaksaakskksqk 102
                          s++++s+s+          +        + + +
  Pavir.3NG279000.1.p 118 STSETSKSSvlslangptdN-------ASTAAH 143
                          33332222233333222221.......111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3232143IPR005333Transcription factor, TCP
PROSITE profilePS5136932.3753391IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEEVGMERAA LNGGTAAAAA WRTCRVARAA AGGKDRHSKV VTARGLRDRR VRLSVPTAIQ  60
FYDIQDRLGV DQPSKAIEWL IRAAAGAIDE LPSLDCSFAL PVGASSSPPA AGDDAEVSTS  120
ETSKSSVLSL ANGPTDNAST AAHQVNHAYN GGNTGNGGSF AELLNCSAND SKPMQQQPTL  180
AYYAAQLPSS HAAPAMSLET MPQLAFLQEQ PHPAVGFDRG TLQSNVTVAA PLWPPSQQAC  240
FLQRLAAAPV DAAGLPFFLG GGTAAPPVTV NAEPRLQLWD FKQERKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-233892155Putative transcription factor PCF6
5zkt_B2e-233892155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG279000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810054.11e-171transcription factor PCF8-like
SwissprotA2ZMR91e-89PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A3L6T2891e-177A0A3L6T289_PANMI; Transcription factor PCF8
STRINGPavir.Cb00038.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.25e-30TCP family protein