PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG266900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 383aa    MW: 40137.6 Da    PI: 6.8002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG266900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-14187233455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  A +Y+++Lq
  Pavir.3NG266900.1.p 187 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAAKYVRELQ 233
                          5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.567183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-19187243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-17188245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-12188233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.64E-15188237No hitNo description
SMARTSM003532.0E-16189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEDSSTFLQW AMDQLHHQHP SAAAASAYHD GAGDGEVIFP SLHALRSGAG QTHSQSQPVA  60
ASVRVRDLTV QVDHLTNSSS SGDSPGAGGA AMDHDAAAGW SPHTARSRTT GLGGGGGGGN  120
SWPVSWNFSA VSAEPARESG GGVVALPDAA VPARVAQLAS AGRRGSSSAA PPAATAPASS  180
SPGPVQDHII AERRRREKIN QRFIELSTVI PGLKKMDKAT ILGDAAKYVR ELQEKVKTLE  240
EDSSHSAGSG SIQSAVLVKK PCHLRDDEAM AISNKGGGSG GVQPPEIEAR LSERSVLLRI  300
HCYNARGLLV RVISEVEQMH LSITHTNVMP FPASTAIITI TAKVEEGFTA TVDEIVRSIN  360
SVLHQHYSSS SEEKEDRRVD HC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191196ERRRRE
2192197RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG266900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808672.10.0transcription factor bHLH25-like
RefseqXP_025808673.10.0transcription factor bHLH25-like
RefseqXP_025808674.10.0transcription factor bHLH25-like
RefseqXP_025808675.10.0transcription factor bHLH25-like
TrEMBLA0A2T7EJP40.0A0A2T7EJP4_9POAL; Uncharacterized protein
STRINGPavir.J30022.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-42bHLH family protein