PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG263500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 321aa    MW: 34728.3 Da    PI: 8.8887
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG263500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-183277147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd ll  +v+q+G+++W++I++ ++ gR++k+c++rw + 
  Pavir.3NG263500.1.p 32 KGSWSPEEDSLLTSLVEQHGPHRWSLISAAIP-GRSGKSCRLRWCNQ 77
                         799*****************************.***********985 PP
2Myb_DNA-binding54.62.6e-1786128347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T+ Ed l++ a++++G++ W+tIar ++ gRt++++k++w++ 
  Pavir.3NG263500.1.p  86 PFTPREDALILAAHARYGNK-WATIARLLP-GRTDNSIKNHWNSN 128
                          89******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.0372782IPR017930Myb domain
SuperFamilySSF466891.12E-3030125IPR009057Homeodomain-like
SMARTSM007179.0E-173180IPR001005SANT/Myb domain
PfamPF002491.5E-173277IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-253385IPR009057Homeodomain-like
CDDcd001675.51E-153476No hitNo description
PROSITE profilePS5129419.25583133IPR017930Myb domain
SMARTSM007172.2E-1583131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2286131IPR009057Homeodomain-like
CDDcd001677.74E-1386129No hitNo description
PfamPF002497.4E-1586128IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDERRRRPGD DEEAAANSSE HQPPPRMEMM KKGSWSPEED SLLTSLVEQH GPHRWSLISA  60
AIPGRSGKSC RLRWCNQLSP DVHHRPFTPR EDALILAAHA RYGNKWATIA RLLPGRTDNS  120
IKNHWNSNLR RCRRRAAAAA APASTSRAAA AAAGPHQPPR RINLLLQQQQ SAACFAAPSA  180
DDPPLPADHQ QQCMMGLLDQ PNPNTNSSTL LLHGHGGTPA AEPPTSLSLS LGLPLPAADP  240
PEAAAAADEV VVAALKLQAP EPPGMMMRHL QPHHQEAAAN AQLIAAVRQM VREEVQRQTG  300
QLACSLMAAA AWAKQPHHHR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-353213158157MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-353213158157MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.1861e-55root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG263500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432280.0AC243228.1 Panicum virgatum clone PV_ABa011-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807021.11e-111transcription factor MYB77-like
TrEMBLA0A2T7EJW91e-113A0A2T7EJW9_9POAL; Uncharacterized protein
TrEMBLA0A3L6SX871e-112A0A3L6SX87_PANMI; MYB transcription factor
STRINGPavir.Cb00156.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135442731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.13e-51myb domain protein 70