PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3NG242200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 301aa    MW: 33333.9 Da    PI: 6.6769
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3NG242200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-174491148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT +Ed+ lv++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Pavir.3NG242200.1.p 44 RGPWTVDEDLTLVNYIADHGEGRWNSLARAAGLKRTGKSCRLRWLNYL 91
                         89********************************************97 PP
2Myb_DNA-binding574.3e-1897140146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++T++E++l++d+++++G++ W++Ia++++ gRt++++k++w++
  Pavir.3NG242200.1.p  97 RGNFTADEQLLILDLHTRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 140
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4483991IPR017930Myb domain
SuperFamilySSF466894.12E-3042138IPR009057Homeodomain-like
SMARTSM007171.3E-144393IPR001005SANT/Myb domain
PfamPF002498.8E-164491IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-224598IPR009057Homeodomain-like
CDDcd001675.03E-114691No hitNo description
PROSITE profilePS5129423.5892146IPR017930Myb domain
SMARTSM007173.5E-1596144IPR001005SANT/Myb domain
PfamPF002491.0E-1597140IPR001005SANT/Myb domain
CDDcd001671.84E-1199140No hitNo description
Gene3DG3DSA:1.10.10.603.4E-2499145IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAEPQRSRSR SRASSPGAPV ELDDDHGQPG GAAQDQEEQL ELRRGPWTVD EDLTLVNYIA  60
DHGEGRWNSL ARAAGLKRTG KSCRLRWLNY LRPDVKRGNF TADEQLLILD LHTRWGNRWS  120
KIAQHLPGRT DNEIKNYWRT RVQKHAKQLN CDANSKRFKD AMRYLWMPHL VDADDHRRRL  180
LQAAHHHHAA DVAAAHGLSG AGMVTSASSD SFATTAESYD DVGGLCYANL LHAGEMAAVG  240
GGGGCWPHEA NHQGLWPAAA DQAGSGGQFQ DPELSGWVQG FSEGMITENF WALEDIWKIQ  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-254114424126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3NG242200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0697440.0BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds.
GenBankKJ7276380.0KJ727638.1 Zea mays clone pUT5565 MYB transcription factor (MYB100) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810240.11e-177transcription factor JAMYB-like
SwissprotQ2QZJ81e-102JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A2S3HEM31e-176A0A2S3HEM3_9POAL; Uncharacterized protein
TrEMBLA0A2T7EI171e-176A0A2T7EI17_9POAL; Uncharacterized protein
STRINGPavir.Cb00499.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-76myb domain protein 78
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]